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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tactattacagtttctgcattattcttaagtatttttttaaatttatccccctttttattcatattttaatgatttttacatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG

Basic information

species Glycine max
transcript GLYMA18G39930.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G39930.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g00530.t01 (Vitis vinifera), 3'ss of exon 2
--tactattacagtttctg-cattattcttaagtatttttttaaatttatccccctttttattcatattttaa--tgatttttacatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
   |||| |    | ||||   |||   |||   | ||| |    |  ||    |||||   | || ||  ||  |   ||||  || ||||||||||||||||||||| || |||||||||||||  |
gtaactacttagttatctgattttaggattatagaatttctgttgtccatgtttcttttgccttatgttgaaagttttcttttttatgttagGTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208333137|gb|GE127414.1|GE127414
EST:     TGCATATCCTGAGCAGG                         TCGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: TGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|58019799|gb|CX706541.1|CX706541
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193429904|gb|FK395552.1|FK395552
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|213620500|gb|DB957344.1|DB957344
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193333926|gb|FK301314.1|FK301314
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|207782942|gb|GD754527.1|GD754527
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGTGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193320346|gb|FK283991.1|FK283991
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193436041|gb|FK401157.1|FK401157
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAG-AAAAATCAAATAGATGCCG
EST: gi|151397652|gb|EV267525.1|EV267525
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|17023106|gb|BM094140.1|BM094140
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|207820378|gb|GD792832.1|GD792832
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|298174286|gb|HO017622.1|HO017622
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGTTGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193726451|gb|FK661137.1|FK661137
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|58022869|gb|CX709610.1|CX709610
EST:     AGGACAAAGACCAGAGTTTTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193349121|gb|FK315299.1|FK315299
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193400899|gb|FK368820.1|FK368820
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTG
EST: gi|208073385|gb|GD867302.1|GD867302
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|192327079|gb|FK015471.1|FK015471
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|58016336|gb|CX703078.1|CX703078
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193415735|gb|FK381437.1|FK381437
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193354431|gb|FK321179.1|FK321179
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|193436727|gb|FK399528.1|FK399528
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|58019388|gb|CX706130.1|CX706130
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
EST: gi|7028397|gb|AW458180.1|AW458180
EST:     AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGG                         TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
genomic: AGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGtactattaca ... acatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttaaatttatccccctttttattcatattttaatgatttttacatattaggTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG
                               ttttaat  putative branch site (score: 3)
                                        tttttac  putative PPT
                   tttttattcatatttt  TA-rich tract