1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaattgtatgctaaactagttgaagggaaaatgggtgtggaagtaatcttcaggctattttgagtataactcaaagtgatacctttgttggaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGGT
species | Glycine max |
transcript | GLYMA18G32830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|209697647|gb|BW663902.1|BW663902
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|209712203|gb|BW681409.1|BW681409
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|209701554|gb|BW655856.1|BW655856
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|298197720|gb|HO045199.1|HO045199
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAATG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|9986256|gb|BE660364.1|BE660364
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|213588372|gb|DB967858.1|DB967858
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|213587157|gb|DB965903.1|DB965903
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|15662426|gb|BI699797.1|BI699797
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAEST: gi|192300545|gb|FG988872.1|FG988872
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGA
EST: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG GCAAGTAATTAAA
genomic: GATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGtttgcgatct ... gaagtgcaggGCAAGTAATTAAA
atcttcaggctattttgagtataactcaaagtgatacctttgttggaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGGT
gtataac putative branch site (score: 3)
tattttgagtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattgtatgctaaactagttgaagggaaaatgggtgtggaagtaatcttcaggctattttgagtataactcaaagtgatacctttgttggaagtgcaggGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGGT
- - -gtatgct
- - - - - - - - - - - - - - - - gggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa