1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agactgcagtttttcttctgagaggttttatttttgtgtgtgatgttattgcttgcctggtttttgctgtaaactgattcttgcatacttgtacaacagtGCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTCTGCTCTGTTTATCCAGTCAAACATCTCTGTTGGTGCTTCTGGTGCACTT
species | Glycine max |
transcript | GLYMA18G25760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGT GCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTCEST: gi|192325246|gb|FK019132.1|FK019132
genomic: TTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGGtatgtgtgac ... gtacaacagtGCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTC
EST: TTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGT GCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTCEST: gi|193535672|gb|FK493518.1|FK493518
genomic: TTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGGtatgtgtgac ... gtacaacagtGCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTC
EST: TATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGT GCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTCEST: gi|209715539|gb|BW682192.1|BW682192
genomic: TATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGGtatgtgtgac ... gtacaacagtGCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTC
EST: TTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGT GCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTCEST: gi|298165603|gb|HO011652.1|HO011652
genomic: TTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGGtatgtgtgac ... gtacaacagtGCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTC
EST: TTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGT GCTTATTGGACTGCTATTTTTCATATCTGGATTT-GGGGGAGTTTGCTTTC
genomic: TTGGGTATTCTAGTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGGtatgtgtgac ... gtacaacagtGCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTC
ttattgcttgcctggtttttgctgtaaactgattcttgcatacttgtacaacagtGCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTCTGCTCTGTTTATCCAGTCAAACATCTCTGTTGGTGCTTCTGGTGCACTT
aactgat putative branch site (score: 3)
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agactgcagtttttcttctgagaggttttatttttgtgtgtgatgttattgcttgcctggtttttgctgtaaactgattcttgcatacttgtacaacagtGCTTATTGGACTGCTATTTTTCATATCTGGATTTGGGGGGAGTTTGCTTTCTGCTCTGTTTATCCAGTCAAACATCTCTGTTGGTGCTTCTGGTGCACTT
- actgcag
- - - - - - -tcttctg
- - - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - gcttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatact