Sequence
atgc intronic sequence ATGC exonic sequence...tttgaagctcttatagtatacattagtgtgataacaattgttcttatggtttcgttttgggtttctctcttttaaataaggttatgtcctttgctttcagTGTAAGAGCAATAGTTGCTCTAAACCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTAACACCTGAGTATTTAGAGAAG
Basic information
species | Glycine max |
transcript | GLYMA18G22370.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G22370.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os08g15090.1 (Oryza sativa), 3'ss of exon 11
-----tttgaagctcttatagtatacattagtgtgataacaattgttcttatggtttcgttttgggtttctctcttttaaataaggttatgtcctttgctttcagTGTAAGAGCAATAGTTGCTCTAAACCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTAACACCTGAGTATTTAGAGAAG
||| | | ||| | || || || |||| ||||| || | | | | ||| | | || | | | ||| |||||| || || || ||||| |||||||||| | ||||| ||||||||| ||||||||||| || || | ||||| || || || |||
gggcacactaagtaatga-agtct-cacggctgaactagaaattattctt--ggcacaagtatagaggatacagtttatattgagcagccatgttgtactt-cagTGTCAGGGCTATTGTTGCATTAAACCTTCACAATTATGCAAGTGGAAGGAATCCATGGGGAAACTTGAAGCCTGAATACTTGGAAAAG
upper sequence: GLYMA18G22370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G30340.1 (Arabidopsis thaliana), 3'ss of exon 6
tttgaagctcttatagtat--acattag-tgtgataacaattgttcttatggtttcgttttgggtttctctcttttaaataaggttatgtcctttgctttcagTGTAAGAGCAATAGTTGCTCTAAACCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTAACACCTGAGTATTTAGAGAAG
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------gttcatataaaactaatcttatctttgattaaaactaaaaaaatggcttcacttataatctctct-----------ggttttgt--tttggtgt-agCGTAAGATCTATTGTGGTGTTGAATCTTTATAACTATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATATTTAGAGAAG
upper sequence: GLYMA18G22370.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0052g01840.t01 (Vitis vinifera), 3'ss of exon 9
------tttgaagctcttatagtatacattagtgtgataacaattgttcttatggtttcgttttgggtttctctcttttaaataaggttatgtcctttgctttca-gTGTAAGAGCAATAGTTGCTCTAAACCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTAACACCTGAGTATTTAGAGAAG
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caaaatagcaacctttttttattttttatttctttttcttgatttattatta--gtatcattt---attcatttcatttcacttaa--tgtttctttcaacttcaagTGTGAGGGCAATAGTTGCTTTGAATCTTCATAGCTATGGAAGTGGAAGACATCCATGGGGTAATCTGAAGCCAGACTATTTGGAAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggtttcgttttgggtttctctcttttaaataaggttatgtcctttgctttcagTGTAAGAGCAATAGTTGCTCTAAACCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTAACACCTGAGTATTTAGAGAAG
tgtcctttgctttc CT-rich tract
ttttaaataaggttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttgaagctcttatagtatacattagtgtgataacaattgttcttatggtttcgttttgggtttctctcttttaaataaggttatgtcctttgctttcagTGTAAGAGCAATAGTTGCTCTAAACCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTAACACCTGAGTATTTAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - -tagtgtg
- - - - - - - - - - - - - - - - - - - - - cttatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttatg