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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttctctctctcttccccaattttttttgttaattttaaaactatttattaatcttttttttcttttgcgtgggtgtgtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCACTACCCTTTACTGGGATTCTTTGCTATTGCTGAAAATGAATCTATTGGA

Basic information

species Glycine max
transcript GLYMA18G17590.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G17590.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os08g34480.1 (Oryza sativa), 3'ss of exon 3
gtgagttttctctctctcttccccaattttttttgttaattttaaaactatttattaatcttttttttcttttgcgtgggtgtgtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCACTACCCTTTACTGGGATTCTTTGCTATTGCTGAAAATGAATCTATTGGA
|| ||| |  ||| | ||      ||       |||   | ||   |  || || |||       ||  | ||| |    | | |   |||||||| |||||||| ||||| ||| | |||||||||||||| |||||||||||||| ||  | |||| ||  ||| | |||||||| |||||||| ||||||
gtaagtata-tctttttccaaaataaacaaaaatgt-gttgttggga--atgtagtaac------ttagtattgaggatttcttttattgcagTGAATGGGCAGTAAACATCCAAAGGGATAGCTATGCATCCTATATTGGGCACTATCCAATGCTGGCATATTTTTCCATTGCTGAGAATGAATCAATTGGA

upper sequence: GLYMA18G17590.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G23325.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagttttctctctctcttccccaattttttttgttaattttaaaactatttattaatcttttttttcttttgcgtgggtgtgtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCACTACCCTTTACTGGGATTCTTTGCTATTGCTGAAAATGAATCTATTGGA
|| ||| || |     | ||       |||||  |   |||  ||||    || | ||  | ||     |||||  ||  | |||||    ||||| ||| | ||||||||||| |||||||| ||||| ||||| ||||| ||||||||  | ||    | |||||| || ||||| || ||||||||||| 
gtaagtatttttcactttttgtttggatttttcag--gattccaaaa----ttgtgaacttattgaaaattttgaatgtttttgtgt---tagTGAATGGACTGTGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATAGCTGAGAACGAATCTATTGGT

upper sequence: GLYMA18G17590.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G14342.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagttttctctctctct--tccccaattttttttgttaattttaaaactatttattaatcttttttttcttttgcgtgggtgtgtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCACTACCCTTTACTGGGATTCTTTGCTATTGCTGAAAATGAATCTATTGGA
||||||||  | |   | |  |   ||| ||||| | |  ||| |     ||||   || |  ||| |    || |  |   ||      | |||||||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||||||| | ||   || ||||||||||||||| || || |||||||||
gtgagtttcttttgattttagtgttcaaatttttatatgcattgttt--ttattggctactaatttgtggaattggtttaaatgg-----tacagTGAGTGGGCTGTGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCACTACCCTATGCTTTCATACTTTGCTATTGCTGAGAACGAGTCTATTGGA

upper sequence: GLYMA18G17590.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0049g01230.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttttctctctctcttccccaattttttttgttaattttaaaactatttattaatcttttttttcttttgcgtgggtgtgtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCACTACCCTTTACTGGGATTCTTTGCTATTGCTGAAAATGAATCTATTGGA
|| |||   || |   | |     |  |||  |||| |   ||  |  |||   ||  ||||| ||   |||   ||   | |||||  ||||||| ||||| ||||| || || ||||||||||||||||||||| |||| |||||||| |||||||  |  ||||||||||||||||| ||||| ||||||
gtaagtaacctattatttt-----agatttggttgtcatcattttatttataggtttttctttcttagatttgatgt---tttgtgtgggcagTGAATGGGCGGTGAATATCCAGCGTGATAGCTATGCATCATATGTTGGCCACTACCCCTTACTGGCGTATTTTGCTATTGCTGAAAACGAATCAATTGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408566|gb|EV278374.1|EV278374
EST:     CATCCCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|208250862|gb|GE046499.1|GE046499
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|208163873|gb|GD963639.1|GD963639
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCA
EST: gi|208283758|gb|GE088996.1|GE088996
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATT
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATT
EST: gi|42722515|gb|CK768414.1|CK768414
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|193395678|gb|FK362231.1|FK362231
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGA-TTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|26046065|gb|CA783407.1|CA783407
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|193636233|gb|FK580756.1|FK580756
EST:     ATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: ATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|31465662|gb|CD407690.1|CD407690
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|192326871|gb|FK015128.1|FK015128
EST:     CATCTCCAAGCCGAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|193466054|gb|FK429781.1|FK429781
EST:     ATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: ATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|19453331|gb|BM954741.1|BM954741
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|193587621|gb|FK542656.1|FK542656
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCGTGCTGGTTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|193363862|gb|FK329668.1|FK329668
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|208135400|gb|GD937925.1|GD937925
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|193329922|gb|FK294528.1|FK294528
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|13790432|gb|BG653023.1|BG653023
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|298166319|gb|HO009290.1|HO009290
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGGTT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|208079178|gb|GD873140.1|GD873140
EST:     CATCTCCAAGCCAAGTATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|193452514|gb|FK417534.1|FK417534
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|8283605|gb|BE021164.1|BE021164
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
EST: gi|13478641|gb|BG508037.1|BG508037
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTgtgagttttc ... gtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttaaaactatttattaatcttttttttcttttgcgtgggtgtgtgtctgcagTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCACTACCCTTTACTGGGATTCTTTGCTATTGCTGAAAATGAATCTATTGGA
              tattaat  putative branch site (score: 2)
     aaaactatttattaat  TA-rich tract