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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgtgtaggagtatataaatcatgaaatttttgttttcttaagtgtgtgtttctctttactttgtggttttggatgatttaaggtatgataacaatctaattgtgcttttcttggttctttttttccagaCCAGATGACACCCCTTGGGATGGAGG

Basic information

species Glycine max
transcript GLYMA18G16160.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193369402|gb|FK336664.1|FK336664
EST:     GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGC                         CCAGATGACACCCCTTGGGATGGAGG
genomic: GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGGtgtgtaggag ... tttttccagaCCAGATGACACCCCTTGGGATGGAGG
EST: gi|15199514|gb|BI423869.1|BI423869
EST:     GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGA                         CCAGATGACACCCCTTGGGATGGAGG
genomic: GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGGtgtgtaggag ... tttttccagaCCAGATGACACCCCTTGGGATGGAGG
EST: gi|18040788|gb|BM309082.1|BM309082
EST:     GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGA                         CCAGATGACACCCCTTGGGATGGAGG
genomic: GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGGtgtgtaggag ... tttttccagaCCAGATGACACCCCTTGGGATGGAGG
EST: gi|19346345|gb|BM891225.1|BM891225
EST:     GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGA                         CCAGATGACACCCCTTGGGATGGAGG
genomic: GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGGtgtgtaggag ... tttttccagaCCAGATGACACCCCTTGGGATGGAGG
EST: gi|193570531|gb|FK524958.1|FK524958
EST:     GCTCCCCAAGACAATTAATTATTATGCTTTGGAATGCTGTTATCTTTGGA                         CCAGATGACACCCCTTGGGATGGAGG
genomic: GCTCCCCAAGACAAT-AAT-ATTATGCTTTGGAATGCTGTTATCTTTGGGtgtgtaggag ... tttttccagaCCAGATGACACCCCTTGGGATGGAGG
EST: gi|7590331|gb|AW706086.1|AW706086
EST:     GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGA                         CCAGATGACACCCCTTGGGATGGAGG
genomic: GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGGtgtgtaggag ... tttttccagaCCAGATGACACCCCTTGGGATGGAGG
EST: gi|6566695|gb|AW234329.1|AW234329
EST:     GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGA                         CCAGATGACACCCCTTGGGATGGAGG
genomic: GGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGGtgtgtaggag ... tttttccagaCCAGATGACACCCCTTGGGATGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttaaggtatgataacaatctaattgtgcttttcttggttctttttttccagaCCAGATGACACCCCTTGGGATGGAGG
                         ttgtgcttttcttggt  CT-rich tract
             ataacaatctaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtgtaggagtatataaatcatgaaatttttgttttcttaagtgtgtgtttctctttactttgtggttttggatgatttaaggtatgataacaatctaattgtgcttttcttggttctttttttccagaCCAGATGACACCCCTTGGGATGGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG