Sequence
atgc intronic sequence ATGC exonic sequence...taacttactctccctttatatctcaattttttatgtgtgcacgtgagctgatgagcatgccaatgactgattactattgtttgaattttacttgattgagATATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCC
Basic information
species | Glycine max |
transcript | GLYMA18G16160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G16160.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g08960.1 (Oryza sativa), 3'ss of exon 1
taacttactctccctttatatctcaattttttatgtgt-gcacgtgagctgatgagcatgccaatgactgattactattgtttgaattttacttgattgagA----------TATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCC--------
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-----------------attggtctggctagtaggtgtcatgggtaaactaaaga--atctcagtgtaggtttcccattccttctatttagcttatttggtgacttggtatctacacagGGTGAATATGTCGACGCCAGCAAGGAAGAGGTTGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAAC
upper sequence: GLYMA18G16160.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 3'ss of exon 2
-taacttactctccctttatatctcaattttttatgtgtgcacgtgagctgatgagcatgccaatgactgattactattgtttgaattttacttgattgagATATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCC------
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ttgagtgataaac---atgcattatactattgtaattgactcactgcattgtttaagatg---attaccaagcaatgttgttttggttg-gcttctctttggaatagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAGAGGTTGCAACAGGATCCACCTGCAGGCATCAGTGGTGCTCCTCAAGACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9986725|gb|BE660833.1|BE660833EST: TTTGTGGGTGGCTTCCTACTTTGTGGTGGAATTGGAGAAATCGATCTGGG ATATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGAT
genomic: TTTGTGGGTGGCTTCCTACTTTGTGGTGGAATTGGAGAAATCGATCTGGGgtatctgcta ... cttgattgagATATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agctgatgagcatgccaatgactgattactattgtttgaattttacttgattgagATATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCC
ttttactt CT-rich tract
attactattgtttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taacttactctccctttatatctcaattttttatgtgtgcacgtgagctgatgagcatgccaatgactgattactattgtttgaattttacttgattgagATATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCC
- - - -ctctccc
- - - - - - - - - - - - - - - - - - -tgcacgt
- - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtttg