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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttcctacaactagttttttctttctatgtacggtaaaggattatgtaagtgaatgatgcatggtatatcataatggttattaatgagtggaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG

Basic information

species Glycine max
transcript GLYMA18G14980.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
gttcctacaactagttttttctttctatgtacggtaaaggattatgtaagtga-atgatgcatggtatatcataatggttattaa-tgagtggaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG
 |      |   ||| ||   |||  |  | | ||| | | || ||| | | | || ||   |      |  | ||   ||||   |  |    ||||||||||||||||  | || || || ||||| || || || |||||    || ||||| ||||||||||||||| |||||||||||||  ||||||| |  || |
-tcagattaggcagtcttaagtttgcac-tgcagtataagtttgtgtcatttacataatatttaactgctgctcataaatatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG

upper sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
gttcctacaactagttttttctttctatgtacggtaaaggattatgta-agtgaatgatgcatggtatatcataatggttattaatgagtggaaat---tgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG
    || ||  |  |  |  | ||   ||||    ||     | |||| | | ||   | ||  | || |    ||| | ||  |    |||  ||   |||||||||| ||  |||| || ||||| || || || || || ||||  || ||||| ||||||||||||||||| ||||| ||||||||||||||  ||||||
---actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatg-tgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324249|gb|FK018220.1|FK018220
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|31472602|gb|CD414630.1|CD414630
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|213590394|gb|DB968028.1|DB968028
EST:     AGAGGGCCGGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|11274382|gb|BF324735.1|BF324735
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|7685487|gb|AW756135.1|AW756135
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|7146956|gb|AW508878.1|AW508878
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|254325254|gb|GR838135.1|GR838135
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|298176065|gb|HO015470.1|HO015470
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|18718644|gb|BM523090.1|BM523090
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|192323954|gb|FK018660.1|FK018660
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGACCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|16996633|gb|BM086005.1|BM086005
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|6070755|gb|AW100142.1|AW100142
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|23731555|gb|BU763908.1|BU763908
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGTTCATGCAGAGTATAATAGATCAAGGTTACACAGAA
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGG-CCA-GCAGAGTATAATAGATCAAGGTTACACAGAA
EST: gi|6133935|gb|AW132328.1|AW132328
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|12773856|gb|BG238783.1|BG238783
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|17963817|gb|BM270562.1|BM270562
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTCTAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|31561268|gb|CD487106.1|CD487106
EST:     AGAGGGCCGGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|151396615|gb|EV266492.1|EV266492
EST:     CTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: CTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|208339479|gb|GE138569.1|GE138569
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAG
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAG
EST: gi|12772023|gb|BG236950.1|BG236950
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|151398873|gb|EV268744.1|EV268744
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGTCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|18039938|gb|BM308232.1|BM308232
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|9203390|gb|BE329676.1|BE329676
EST:     GGCCAGCGGACCCAATTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: GGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|207809462|gb|GD780976.1|GD780976
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|15664951|gb|BI702322.1|BI702322
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|5820258|gb|AI988464.1|AI988464
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|21675878|gb|BQ628229.1|BQ628229
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|31472178|gb|CD414206.1|CD414206
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|46492678|gb|CN472234.1|CN472234
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|9564242|gb|BE473751.1|BE473751
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|298190246|gb|HO032367.1|HO032367
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|31474872|gb|CD416900.1|CD416900
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|151397803|gb|EV267676.1|EV267676
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|15000552|gb|BI321366.1|BI321366
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|208277711|gb|GE074844.1|GE074844
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACAACAAGAA
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACA-CA-GAA
EST: gi|192299687|gb|FG987761.1|FG987761
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|208134430|gb|GD933105.1|GD933105
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAA
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAA
EST: gi|58024477|gb|CX711218.1|CX711218
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|7146199|gb|AW508184.1|AW508184
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|31560902|gb|CD486740.1|CD486740
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|26268191|gb|CA819254.1|CA819254
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|16280942|gb|BI944228.1|BI944228
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|31308462|gb|CD393665.1|CD393665
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|18041382|gb|BM309676.1|BM309676
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|254344878|gb|GR851361.1|GR851361
EST:     GCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: GCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|4301547|gb|AI443206.1|AI443206
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|7029640|gb|AW459357.1|AW459357
EST:     CCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: CCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|7232405|gb|AW567761.1|AW567761
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|12773537|gb|BG238464.1|BG238464
EST:     GAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: GAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|16997137|gb|BM086509.1|BM086509
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTTAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|298181558|gb|HO025733.1|HO025733
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|213597650|gb|DB962560.1|DB962560
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|151399775|gb|EV269646.1|EV269646
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGACCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|4396238|gb|AI495235.1|AI495235
EST:     AGAGGGCCAGCGGACCCAGGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|7234593|gb|AW569929.1|AW569929
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|151411402|gb|EV281213.1|EV281213
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|31463280|gb|CD405308.1|CD405308
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|31470212|gb|CD412360.1|CD412360
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
EST: gi|192331783|gb|FK024887.1|FK024887
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtgaatgatgcatggtatatcataatggttattaatgagtggaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG
                                 tattaat  putative branch site (score: 2)
                   tatatcataatggtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcctacaactagttttttctttctatgtacggtaaaggattatgtaagtgaatgatgcatggtatatcataatggttattaatgagtggaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- tcctaca
- - - - - - - - - - - - -tatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgagtg