1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttaaaatgaaatttccataactcattggtatagactcatgtgcctctctttgtcatattgttttccatataattaatgtgatttctcatgtctgttcagGTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCAGTTGCTGTGAGATCAAATGGTGTACTTTTCCCAAGAGGCCAACCCTTTC
species | Glycine max |
transcript | GLYMA18G11520.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAG GTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCAEST: gi|17964108|gb|BM270848.1|BM270848
genomic: CTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAGgtttgtgtat ... gtctgttcagGTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCA
EST: CTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAG GTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCA
genomic: CTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAGgtttgtgtat ... gtctgttcagGTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCA
tctctttgtcatattgttttccatataattaatgtgatttctcatgtctgttcagGTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCAGTTGCTGTGAGATCAAATGGTGTACTTTTCCCAAGAGGCCAACCCTTTC
aattaat putative branch site (score: 3)
tctgttc putative PPT
atattgttttccatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaaatgaaatttccataactcattggtatagactcatgtgcctctctttgtcatattgttttccatataattaatgtgatttctcatgtctgttcagGTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCAGTTGCTGTGAGATCAAATGGTGTACTTTTCCCAAGAGGCCAACCCTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - aaatgaaa