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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcgtttcctgttttaaagttcttctttgggtttggtgtttaactgtttatggcgatgagtaattgcattacggtgcatgcttttgggtactgttttgttttctgacttgggactactgggggtatcgatgatggcagGAAAGACACTTATGGTGTGTTTGCAGACCCTGTTGATCCAGAAGAG

Basic information

species Glycine max
transcript GLYMA18G10890.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10890.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G55040.2 (Arabidopsis thaliana), 3'ss of exon 3
gtatgtttcgtttcctgttttaaagttcttctttgggtttggtgtttaactgtttatggcgatgagtaattgcattacggtgcatgcttttgggtactgttttgttt-tctgacttgggactactgggggtatcgatgatggcagGAAAGACACTTATGGTGTGTTTGCAGACCCTGTTGATCCAGAAGAG
                                         ||    |||||   ||  |  |   |  |  | |    |||  ||| |      | ||||| | || ||| ||||||      ||          ||    |||||||||||  |||||||||| |||||| ||||||||||| ||||||
-----------------------------------------gtacacaactgaa-attccttttctttctctcttgtgtgtgattgcgtgatcacattgtttagcttatcttacttggagtctttg-------ttttgcaaacagGAAAGACATCTATGGTGTGTATGCAGAACCTGTTGATCCTGAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggtactgttttgttttctgacttgggactactgggggtatcgatgatggcagGAAAGACACTTATGGTGTGTTTGCAGACCCTGTTGATCCAGAAGAG
                 ttctgac  putative branch site (score: 2)
          ttttgtttt  TA-rich tract