Sequence
atgc intronic sequence ATGC exonic sequence...atttcactgcatatctgcatttatgatctaataggttctagacttatagttactatagggtaggcatttcataatagttttctttactttgtatgctcagTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAG
Basic information
species | Glycine max |
transcript | GLYMA18G10700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G10700.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g32670.1 (Oryza sativa), 3'ss of exon 7
atttcactgcatatctgcatttatgatctaataggttctagacttatagttactatag-ggtaggcatttcataatagttttctttac-tttgtatgctcagTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAG
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gcatcacagt-catataccttaat-atcaatccactattattttttttttgatttaagtgatagagcaatggttgtgatgctgtttgtatttatactctcagTGTTGGTGCTGGGTGTTCTCAACTTCTATCAGATATGCAAGCCTTCAAG
upper sequence: GLYMA18G10700.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G076387_T01 (Zea mays), 3'ss of exon 7
-atttcactgcatatctgcatttatgatctaataggttctagacttatagttactatagggtagg-ca--tttcataatagttttctttactttgtatgctcagTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAG
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tgtgtgatgatgt-cctatatctacatttctgtcaatgcaattcttatacttgctaagtaataaaacagtttttgtgatgcttttttttattattt---ctcagTCTTGGTGCTGGATGCTCTCAACTTCTATCAGATATGCAGGCTTTCAAG
upper sequence: GLYMA18G10700.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G55060.2 (Arabidopsis thaliana), 3'ss of exon 7
atttcactgcatatctgcatttatgatctaataggttctagacttatagttactatagggtaggcatttcataatagttttctttactttgtatg-ctcagTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAG
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aatagacgtattatctggctgaataatatataattccgtttcgttattcagac-atccaattatcttgatagattggattattgtctttcttatggttcagCATGGGGGCTGGATGTTCTCAACTCTTGTCTGACATGCAGGCTTTCAAG
upper sequence: GLYMA18G10700.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0090g00690.t01 (Vitis vinifera), 3'ss of exon 8
atttcactgcatatctgcatttatgatctaataggttctagacttatagttactatagggtaggcatttcataatagttttctttactttgt-----atgctcagTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAG
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---gaagcaagtgtttcctctactaaa--gataaatattctttttgttgttcctttaatctaggcattctttgacaatttgtctcattttttcccctatgctcagTGTTGGTGCTGGATGTTCTCAACTACTTTCAGACATGCAGGCTTTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagttactatagggtaggcatttcataatagttttctttactttgtatgctcagTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAG
ttttctttactttgt CT-rich tract
atttcataatagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttcactgcatatctgcatttatgatctaataggttctagacttatagttactatagggtaggcatttcataatagttttctttactttgtatgctcagTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - cactgca
- - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttc