1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ggcatgtagctgctctggattgttttaaataatgacattttttttgtcacttgtaaaaatggttggtatttatatcctttaGATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACCTGACATAAAGCCCGGTTATATTGTGCAACTCAAAGT
species | Glycine max |
transcript | GLYMA18G08770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCGTATCAAATTTAAGAGATTAGACAAAACTGCCAGGCACATTATGCA GATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACCEST: gi|298194709|gb|HO043181.1|HO043181
genomic: CCTCGTATCAAATTTAAGAGATTAGACAAAACTGCCAGGCACATTATGCAggcatgtagc ... atatcctttaGATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACC
EST: CCTCGTATCAAATTTAAGAGATTAGACAAAACTGCCAGGCACATTATGCA GATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACCEST: gi|15286187|gb|BI470078.1|BI470078
genomic: CCTCGTATCAAATTTAAGAGATTAGACAAAACTGCCAGGCACATTATGCAggcatgtagc ... atatcctttaGATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACC
EST: CCTCGTATCAAATTTAAGAGATTAGACAAAACTGCCAGGCACATTATGCA GATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACC
genomic: CCTCGTATCAAATTTAAGAGATTAGACAAAACTGCCAGGCACATTATGCAggcatgtagc ... atatcctttaGATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACC
aaataatgacattttttttgtcacttgtaaaaatggttggtatttatatcctttaGATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACCTGACATAAAGCCCGGTTATATTGTGCAACTCAAAGT
tatccttt CT-rich tract
tatttatatccttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcatgtagctgctctggattgttttaaataatgacattttttttgtcacttgtaaaaatggttggtatttatatcctttaGATTTTAGACAAGGAGGCAGTAGAGGAGGTGAGAGGGCAAAGAGAGATACCTGACATAAAGCCCGGTTATATTGTGCAACTCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA