1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tattttctatctacagttgtaattgtccttgttatagtatctactaaagccatctaatatgcttcactttaccgtaaattggatttcaatttgattgcagGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAATATCCCTTGGAACAGCCAAAGGACTTGCCCACGTTCATTCTGTTGGTGG
species | Glycine max |
transcript | GLYMA18G05740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACG GTGGTAAGGACAGGTGGAAGAACTCCATTAGACTGGGEST: gi|23728294|gb|BU762195.1|BU762195
genomic: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACGgtatgcattt ... ttgattgcagGTGGTA-GGACAGGTGGAAGAACTCCATTAGACTGGG
EST: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACG GTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAAEST: gi|207681293|gb|GD663832.1|GD663832
genomic: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACGgtatgcattt ... ttgattgcagGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAA
EST: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACG GTGGTAGGACAGGTGGAAGAAEST: gi|193514669|gb|FK469263.1|FK469263
genomic: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACGgtatgcattt ... ttgattgcagGTGGTAGGACAGGTGGAAGAA
EST: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACG GTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAAEST: gi|207681100|gb|GD661847.1|GD661847
genomic: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACGgtatgcattt ... ttgattgcagGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAA
EST: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACG GTAGGTAAGGACAGGTGGAAGAACTCCATTAGACTGGGEST: gi|193501029|gb|FK465022.1|FK465022
genomic: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACGgtatgcattt ... ttgattgcagGT-GGTA-GGACAGGTGGAAGAACTCCATTAGACTGGG
EST: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACG GTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAAEST: gi|207681435|gb|GD661454.1|GD661454
genomic: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACGgtatgcattt ... ttgattgcagGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAA
EST: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACG GTGGTAAGGACAGGTGGAAGAACTCCATTAGACTGGG
genomic: TTTGGTATATGACTATGTCCCTGGTGGCAACCTACACACACTCTTGCACGgtatgcattt ... ttgattgcagGTGGTA-GGACAGGTGGAAGAACTCCATTAGACTGGG
aaagccatctaatatgcttcactttaccgtaaattggatttcaatttgattgcagGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAATATCCCTTGGAACAGCCAAAGGACTTGCCCACGTTCATTCTGTTGGTGG
atttcaatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttctatctacagttgtaattgtccttgttatagtatctactaaagccatctaatatgcttcactttaccgtaaattggatttcaatttgattgcagGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAATATCCCTTGGAACAGCCAAAGGACTTGCCCACGTTCATTCTGTTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - gtccttg
- - - - - - - - - - - - - - - - - - - - - - - - -ccatcta