1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctcctaaagtttcctgggggtttcaaattcattgattgtatatgttcttatcaatggtttagagcaacatcttcaaatcttccctgccatttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCTGCAATTATATTTATTGATGAGGTTGATGCAATAGCCACTGCTAGATTT
species | Glycine max |
transcript | GLYMA18G05730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGA GGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCEST: gi|5607016|gb|AI901114.1|AI901114
genomic: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAggtatcattt ... ttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCC
EST: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGC-G- ---TCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCEST: gi|58022279|gb|CX709020.1|CX709020
genomic: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAggtatcattt ... ttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCC
EST: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGA GGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCEST: gi|5508931|gb|AI855489.1|AI855489
genomic: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAggtatcattt ... ttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCC
EST: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGG-G- ---TCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCEST: gi|16342518|gb|BI968113.1|BI968113
genomic: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAggtatcattt ... ttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCC
EST: CTTTCATCAGGG-TGNNGGGATCTGAGTTTGTGCAGAAGTATC-T--T-- GGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCEST: gi|17401263|gb|BM178045.1|BM178045
genomic: CTTTCATCAGGGTTG-TGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAggtatcattt ... ttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCC
EST: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGA GGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCC
genomic: GCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAggtatcattt ... ttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCC
tcttatcaatggtttagagcaacatcttcaaatcttccctgccatttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCTGCAATTATATTTATTGATGAGGTTGATGCAATAGCCACTGCTAGATTT
tcttccctgccattt CT-rich tract
atttatatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctaaagtttcctgggggtttcaaattcattgattgtatatgttcttatcaatggtttagagcaacatcttcaaatcttccctgccatttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCTGCAATTATATTTATTGATGAGGTTGATGCAATAGCCACTGCTAGATTT
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