Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatggggagataaaaataaaaaatttctaatcttctggaggttactttgtttaacaattaacaagtgcaaattgatccttttttcatttccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGGCAAATTGAGTAGTGCAGAGAAAATTGAATGGAATAACC

Basic information

species Glycine max
transcript GLYMA18G05520.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701169|gb|BW652202.1|BW652202
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|26045687|gb|CA783193.1|CA783193
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|151412353|gb|EV282165.1|EV282165
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|5687803|gb|AI940875.1|AI940875
EST:     AATTCAATGGCTGGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGAT                         -GTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATG
genomic: AATTCAATGGCT-GGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTG-Ttgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATG
EST: gi|208034657|gb|GD834231.1|GD834231
EST:     GGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|7326838|gb|AW620636.1|AW620636
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|209701362|gb|BW655958.1|BW655958
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgtttaacaattaacaagtgcaaattgatccttttttcatttccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGGCAAATTGAGTAGTGCAGAGAAAATTGAATGGAATAACC
                           ttgatccttttttcat  CT-rich tract
     tttaacaattaacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaatggggagataaaaataaaaaatttctaatcttctggaggttactttgtttaacaattaacaagtgcaaattgatccttttttcatttccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGGCAAATTGAGTAGTGCAGAGAAAATTGAATGGAATAACC

- -tggggag
- - - - - ataaaaa
- - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - -tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagtgc