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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taactttcaacccacttccatattcactttttatttttatcgttgttactaatttttatgttactgtttgtaggCATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATG

Basic information

species Glycine max
transcript GLYMA18G04910.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04910.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------taactttcaacccacttccatattcactttttatttttatcgttgttac--taatttttatgttactgtttgtaggCATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATG
                          |    | ||     |    | || | ||| |||  |||   || ||||  | |  | |   | | | ||| ||||||||||||||| |||||||| ||||| |||||||||||  | ||| | ||||| || |||||||| |||| 
tgttatcttaatagttagcccaatcaagagattaaggagttcatctcttgattttctataattaatatttttacgtttaactctggttcaatatttatagGCATGGAGGCACTTACAAGGTCTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAAT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991103|gb|BI316776.1|BI316776
EST:     ATCATGAAATCGTACCCACCGAACTCATCGACCGAATTGCGCGTCTCAAG                         CATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTG
genomic: ATGATGAAATCGTACCCACCGAACTCATCGACCGAATTGCGCGTCTCAAGtaactttcaa ... tgtttgtaggCATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTG
EST: gi|298168888|gb|HO009818.1|HO009818
EST:     ATGAAATCGTACCCACCGAACTCATCGACCGAATTGCGCGTCTCAAG                         CATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTG
genomic: ATGAAATCGTACCCACCGAACTCATCGACCGAATTGCGCGTCTCAAGtaactttcaa ... tgtttgtaggCATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattcactttttatttttatcgttgttactaatttttatgttactgtttgtaggCATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATG
                           tactaat  putative branch site (score: 1)
        tttttatttttatcgt  TA-rich tract