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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttatggtgtttttgtatgctttggttttggtttcacctttttgttaggagaatgtaggtgcatcttataggaatctgatgttggacatttgtgattgtagATGATTCCTGATATTACTTTTGGTAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGTGTTGCTAGTTTTGGTGCGTACTTACTGTCACGGAATGTCG

Basic information

species Glycine max
transcript GLYMA18G03890.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03890.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 3'ss of exon 2
gttgttatggtgtttttgtatgctttggttttggtttcacctttttgttag--gagaatgtaggtgcatcttataggaatctgatgttggacatttgtgattgtagATGATTCCTGATATTACTTTTGGTAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGTGTTGCTAGTTTTGGTGCGTACTTACTGTCACGGAATGTCG
                 |||||||  | || |  ||| | ||  |    |    |  |||| | ||  ||| |   | | |   |||      | |||   |  ||||| | || |||||| | |||||    || |  || || |  || |||||||||||||| || || ||||||||||| |||||||| |||||  ||||  
-----------------gtatgct--gattgtacttttatctgatgaaaattttatcatgttgctgactctcagtagcaccacctgtc---tctctgttcatccagATGGTACCAGATATTGCATTTGGCTCTCACACTAGAGTTGCCCTGGATGTTGGCTGTGGAGTAGCAAGTTTTGGTGCATACTTACTTTCACGTGATGTGT

upper sequence: GLYMA18G03890.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 2
gttgttatggtgtttttgtatgctttggttttggtttcacctttttgttaggagaatgtaggtgcatcttataggaatctgatgttggacatttgtgattgtagATGATTCCTGATATTACTTTTGGTAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGTGTTGCTAGTTTTGGTGCGTACTTACTGTCACGGAATGTCG
|| | |      |||||  | |   | ||| | ||||    ||   || |   |  | |   | | | | ||  ||   |||  |  |   ||||||  || ||||| || |||||||||| ||||| |||||||| ||||| | | | |||||||| |||||||| || ||||||||||| ||  || |||| ||  ||||| 
gtggct----catttttccaagtagtagttcttgttt----ttcgcgtcaactgtttatgtat-cttttcatctgatgttgagctctggagtttgtgtctgcagATGGTTTCTGATATTACGTTTGGCAAGCATATTAGGGTTGCTATGGATGTTGGTTGTGGTGTGGCGAGTTTTGGTGCTTATCTATTGTCTCGTGATGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggagaatgtaggtgcatcttataggaatctgatgttggacatttgtgattgtagATGATTCCTGATATTACTTTTGGTAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGTGTTGCTAGTTTTGGTGCGTACTTACTGTCACGGAATGTCG
                           atctgat  putative branch site (score: 4)
                atcttata  TA-rich tract