Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtccctccctctctttattatagtctcataagggtccctgtgtttctttcttgttttctaggagaaaaaagcaattttaactttgattatttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTGCCCAATCCCATACACTTGACTGTTGATACAGGA

Basic information

species Glycine max
transcript GLYMA18G03340.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03340.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g03470.t01 (Vitis vinifera), 3'ss of exon 2
-ttgtccctccctctctttattatagtctcataagggtccctgtgtttctttcttgttttctaggagaaaaaagcaattttaactttgatt--atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTGCCCAATCCCATACACTTGACTGTTGATACAGGA
 ||         |  ||||| | ||||     |||  ||      ||  |||  |  | | || | |   |  |   | ||   | |  ||  || |||| ||||||||||| ||| | ||||| ||||| ||||||||||||||||| || || || ||| |||| || |  || ||||| || |||||||||||||||  |
tttagtggataattactttactgtagt---ggaagtatcttctaattcattttgttgtctttaagtgttgattgacttattgcatgtccttgaatgtttgcagGTATTCAACTGGTTTAGGAGTCACTGGCGGTAGTGCATTAATCCATGAATTCTACTCTAGAGAGGTTCAAAACCCCATTCATTTGACTGTTGATACAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719677|gb|BW651051.1|BW651051
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|19935056|gb|BQ080086.1|BQ080086
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|19453023|gb|BM954433.1|BM954433
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|26056153|gb|CA799067.1|CA799067
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|213594444|gb|DB968000.1|DB968000
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|192330295|gb|FK019860.1|FK019860
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGCCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|151393659|gb|EV263534.1|EV263534
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGGTG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|213589009|gb|DB973109.1|DB973109
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|9264567|gb|BE352714.1|BE352714
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|192326353|gb|FK015885.1|FK015885
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|7232801|gb|AW568154.1|AW568154
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|298189351|gb|HO037754.1|HO037754
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|8402060|gb|BE057694.1|BE057694
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|21677033|gb|BQ629384.1|BQ629384
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|17401631|gb|BM178413.1|BM178413
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|18730042|gb|BM525647.1|BM525647
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|151395671|gb|EV265548.1|EV265548
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTGTTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|193354491|gb|FK318999.1|FK318999
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|10709468|gb|BF009192.1|BF009192
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|209707331|gb|BW670894.1|BW670894
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|192332673|gb|FK025330.1|FK025330
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|209728075|gb|BW655308.1|BW655308
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|193337514|gb|FK304210.1|FK304210
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|192307669|gb|FK001613.1|FK001613
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|19269241|gb|BM885497.1|BM885497
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|254317273|gb|GR826218.1|GR826218
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|8283503|gb|BE021062.1|BE021062
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|209700662|gb|BW670451.1|BW670451
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|192295877|gb|FG990901.1|FG990901
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|151403386|gb|EV273196.1|EV273196
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|192323135|gb|FK016326.1|FK016326
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|16996701|gb|BM086073.1|BM086073
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|17963043|gb|BM269797.1|BM269797
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAAGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|105633855|gb|DW247218.1|DW247218
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|209718436|gb|BW666248.1|BW666248
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|209713285|gb|BW684372.1|BW684372
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|151410317|gb|EV280132.1|EV280132
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|16348136|gb|BI973731.1|BI973731
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|213598916|gb|DB964505.1|DB964505
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|213617601|gb|DB969313.1|DB969313
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|298177731|gb|HO023750.1|HO023750
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|192333944|gb|FK024757.1|FK024757
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|298188977|gb|HO035702.1|HO035702
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|208332629|gb|GE126920.1|GE126920
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|298186776|gb|HO037409.1|HO037409
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|10709184|gb|BF008908.1|BF008908
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|193347108|gb|FK311412.1|FK311412
EST:     TAATA-CCCAACCAAAAAAGTAGAATCCAAAGGAAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: TAATATCCC-ACC-AAAAAGT-GAATCCAAAGG-AAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|8827627|gb|BE211357.1|BE211357
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|18733000|gb|BM527369.1|BM527369
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|298190024|gb|HO032145.1|HO032145
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|193363243|gb|FK325759.1|FK325759
EST:     GTTAATATTCCCACCAAAAAGTGAATCCTAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: GTTAATA-TCCCACCAAAAAGTGAATCC-AAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|298186049|gb|HO036682.1|HO036682
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|298168950|gb|HO020254.1|HO020254
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|26048921|gb|CA785374.1|CA785374
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|21889444|gb|BQ742657.1|BQ742657
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|21285592|gb|BQ473463.1|BQ473463
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GCATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|9439956|gb|BE440468.1|BE440468
EST:     TGTTAATATCCCACTCTAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: TGTTAATATCCCAC-CAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|192303416|gb|FG995668.1|FG995668
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|151393162|gb|EV263037.1|EV263037
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
EST: gi|15815430|gb|BI787705.1|BI787705
EST:     ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATG                         GTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT
genomic: ATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGgtaatttcaa ... atttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttcttgttttctaggagaaaaaagcaattttaactttgattatttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTGCCCAATCCCATACACTTGACTGTTGATACAGGA
                                           ttattttt  CT-rich tract
                     aaaaaagcaattttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtccctccctctctttattatagtctcataagggtccctgtgtttctttcttgttttctaggagaaaaaagcaattttaactttgattatttttgtagGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTGCCCAATCCCATACACTTGACTGTTGATACAGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa