Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcatgcaaaaaattaaattgaataagttcgtgtatatatatattattcatgtaactgatgattttatgtttttgtatgaatgaaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACAATCCCAATCACTGGAACTGGTATTAACCCTGCACGTAGTCTCGGTG

Basic information

species Glycine max
transcript GLYMA18G03330.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03330.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S1_535V6.2 (Physcomitrella patens), 3'ss of exon 2
--------------------gtat-gtgca--tgcaaaaaattaaattgaataagttcgtgtatatatatattattcat-gtaact-gatgattttatgtttttgta--tgaatgaaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACAATCCCAATCACTGGAACTGGTATTAACCCTGCACGTAGTCTCGGTG
                    ||   || ||  |  | |  |         | | || |  |   || | |  || || |   |  | |||| | | |   |  ||    |  ||| | |   ||| |  | || ||  | || || || ||||| || ||| |||||||||||||||| || || ||||| |||||||| || ||||| || |||||||| ||||
gtgagtacactccgtttccggtgcagttcagttctagattaccgcgcctgagacgtgctggctgatctttggtactcctcacagttagatggtctcaaaatgatgctcttcgatggacttg-cagGTGCTTGCGCCTCTTCCCATCGGATTCGCAGTTTTCCTGGTGCACTTGGCCACCATTCCCATCACCGGAACTGGCATCAACCCCGCCCGTAGTCTAGGTG

upper sequence: GLYMA18G03330.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S102_107V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------gtatgtgcatgcaaaaaattaaat-tgaataagttcgtgtatatatatattattcatgtaactgatgattttatgtttttgtatgaatgaaatgat--------------cagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACAATCCCAATCACTGGAACTGGTATTAACCCTGCACGTAGTCTCGGTG
                                                             || |   ||   |   ||| | || |||||   | |        | |||  |   ||  || | |  ||   |     |   |  ||  |||| |               ||| |  | || ||  | || ||||| ||||| |||||  |||| || |||||||| || || ||||| |||||||| |||||||||||||||||||| || |
gtatgtttcacttattcacggtggtacatttcaattacagggaaagttggagggtggatgtgttttatcactgatttaatcagatctgaattgctgctgacgacgacataaaaaa-ataaaaataaaaataaaaaaaactgaaacaaaaaaaataaaaactcttcgtcttgcagGTGCTTGCCCCTCTTCCTATTGGATTCGCAGTGTTTCTGGTACATTTGGCCACCATTCCCATCACCGGAACTGGCATTAACCCTGCACGTAGTCTGGGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatattattcatgtaactgatgattttatgtttttgtatgaatgaaatgatcagATTTTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACAATCCCAATCACTGGAACTGGTATTAACCCTGCACGTAGTCTCGGTG
               aactgat  putative branch site (score: 3)
                       attttatgtttttgta  TA-rich tract