1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaatgagattcttctcagtttgtacccagttttggtttcttctaaggagaaagtaaaaaaaaaaaatgatttttttcttctggattttgtgatgcgcaggTTGCTCAGGTTCTGTTGACTCTGCCTTACTCATTCTCTCAGCTGGGAATGCTTTCAGGCATCATATTCCAAGTGTTCTATGGCTTGCTTGGGAGTTATAC
species | Glycine max |
transcript | GLYMA18G03280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATGGTGGTTCTGCCTATGATGCTTGGTTCAGCTGTGCCTCAAATCAGG TTGCTCAGGTTCTGTTGACTCTGCCTTACTCATTCTCTCAGCTGGGAATGCEST: gi|298189657|gb|HO038060.1|HO038060
genomic: GCATGGTGGTTCTGCCTATGATGCTTGGTTCAGCTGTGCCTCAAATCAGGtaacactatg ... gatgcgcaggTTGCTCAGGTTCTGTTGACTCTGCCTTACTCATTCTCTCAGCTGGGAATGC
EST: GCATGGTGGTTCTGCCTATGATGCTTGATTCAGCTGTGCCTCAAATCAGG TTGCTCAGGTTCTGTTGACTCTGCCTTACTCATTCTCTCAGCTGGGAATGC
genomic: GCATGGTGGTTCTGCCTATGATGCTTGGTTCAGCTGTGCCTCAAATCAGGtaacactatg ... gatgcgcaggTTGCTCAGGTTCTGTTGACTCTGCCTTACTCATTCTCTCAGCTGGGAATGC
ggagaaagtaaaaaaaaaaaatgatttttttcttctggattttgtgatgcgcaggTTGCTCAGGTTCTGTTGACTCTGCCTTACTCATTCTCTCAGCTGGGAATGCTTTCAGGCATCATATTCCAAGTGTTCTATGGCTTGCTTGGGAGTTATAC
taaaaaaaaaaaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgagattcttctcagtttgtacccagttttggtttcttctaaggagaaagtaaaaaaaaaaaatgatttttttcttctggattttgtgatgcgcaggTTGCTCAGGTTCTGTTGACTCTGCCTTACTCATTCTCTCAGCTGGGAATGCTTTCAGGCATCATATTCCAAGTGTTCTATGGCTTGCTTGGGAGTTATAC
- - - - - - - - - - - - - - - - - - - - - - - - - aagtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa