1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaatatatatatagtggattgctttgtttgaaagaatttttatagtgtgtttctttcttgtaactttagttaattttgttatgttgtgaaaaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAACGAGTCCAAGGCCATGGTTAAATTTCAACTTAAGAAGGTGCTCTGCAT
species | Glycine max |
transcript | GLYMA18G02970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAG GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGEST: gi|14009228|gb|BG725832.1|BG725832
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGG
EST: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAG GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAEST: gi|7234411|gb|AW569749.1|AW569749
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
EST: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAG GAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
genomic: AGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGgcatgtattg ... aaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTA
tgtgtttctttcttgtaactttagttaattttgttatgttgtgaaaaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAACGAGTCCAAGGCCATGGTTAAATTTCAACTTAAGAAGGTGCTCTGCAT
taactttagttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatatatatatagtggattgctttgtttgaaagaatttttatagtgtgtttctttcttgtaactttagttaattttgttatgttgtgaaaaccttgcagGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAACGAGTCCAAGGCCATGGTTAAATTTCAACTTAAGAAGGTGCTCTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg