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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctaataattggtgatagctatgttcttttaataagaaaatttgtgtattctagttaatgtcaacaactcccttcaattgacattggacatttccatttcattggctgcagTTCTGCTGGTAGAAAACCAAGTGAAATTATGAAGTTTTTCTTGACAACTTTTATTGGTATAGTTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTG

Basic information

species Glycine max
transcript GLYMA18G01710.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964287|gb|BM271024.1|BM271024
EST:     GAACATACAGTTGCAGAAGTTCCAACATAAATGGTGATCATCACTCGCAG                         TTCTGCTGGTAGAAAACCAAGTGAAATTATGAAGTTTTTCTTGACAACTTT
genomic: GAACATACAGTTGCAGAAGTTCCAACATAAATGGTGATCATCACTCGCAGgtctaataat ... ttggctgcagTTCTGCTGGTAGAAAACCAAGTGAAATTATGAAGTTTTTCTTGACAACTTT
EST: gi|192302135|gb|FG995815.1|FG995815
EST:     GAACATACAGTTGCAGAAGTTCCAACATAAATGGTGATCATCACTCGCAG                         TTCTGCTGGTAGAAAACCAAGTGAAATTATGAAGTTTTTCTTGACAACTTT
genomic: GAACATACAGTTGCAGAAGTTCCAACATAAATGGTGATCATCACTCGCAGgtctaataat ... ttggctgcagTTCTGCTGGTAGAAAACCAAGTGAAATTATGAAGTTTTTCTTGACAACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtcaacaactcccttcaattgacattggacatttccatttcattggctgcagTTCTGCTGGTAGAAAACCAAGTGAAATTATGAAGTTTTTCTTGACAACTTTTATTGGTATAGTTTTCGGATTCTTTATAGGAGTATCAATTCCAACATTG
                   aattgac  putative branch site (score: 3)
                                        tttcatt  putative PPT
                                       atttcatt  TA-rich tract