1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcacatcccatttgctactatatatgctctcagtgccatattaaatgatgaaattcttattagtctagtttgatttttctcgtaaaaacaattcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTGAATCATACTGTGGACAAGGAAATAGAAGGTTTAGTG
species | Glycine max |
transcript | GLYMA18G01590.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG ACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTEST: gi|193461786|gb|FK426327.1|FK426327
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
EST: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG ACAGAGAAAATAGAGTTGGAAACTAEST: gi|193323930|gb|FK291678.1|FK291678
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTA
EST: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG ACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTEST: gi|193490939|gb|FK454692.1|FK454692
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
EST: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG ACAGAGAAAATAGAGTTGGAGACTACTGTAGTGGATGAAACAAAGGAACGTEST: gi|208110510|gb|GD913114.1|GD913114
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
EST: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG ACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGEST: gi|193625662|gb|FK577902.1|FK577902
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATG
EST: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG ACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
tgatgaaattcttattagtctagtttgatttttctcgtaaaaacaattcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTGAATCATACTGTGGACAAGGAAATAGAAGGTTTAGTG
gtttgat putative branch site (score: 5)
aaattcttattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacatcccatttgctactatatatgctctcagtgccatattaaatgatgaaattcttattagtctagtttgatttttctcgtaaaaacaattcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTGAATCATACTGTGGACAAGGAAATAGAAGGTTTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-cacatcc
- - - - - - tgctact
- - - - - - - - - - - tatgctc
- - - - - - - - - - - - - - -tcagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca