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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccgttaccctctcttaatttgacaaaattcttaatacatgttatttattttctgtgtttatttatccgtcatttttcttcactcgaacgtaagtgtttgtcttttatgtgttgattttagcttaatttaatctaatacactgattgtgccatgttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG

Basic information

species Glycine max
transcript GLYMA18G01110.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011275|gb|BG726206.1|BG726206
EST:     GCTATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GCTATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|305377802|gb|HO652033.1|HO652033
EST:     CGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: CGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192318954|gb|FK009034.1|FK009034
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|193441154|gb|FK409975.1|FK409975
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|151411461|gb|EV281272.1|EV281272
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|15815139|gb|BI787414.1|BI787414
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|120529639|gb|EH257773.1|EH257773
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192330707|gb|FK022320.1|FK022320
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192297172|gb|FG988268.1|FG988268
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|6072248|gb|AW101635.1|AW101635
EST:     GAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|14126219|gb|BG790657.1|BG790657
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|21888291|gb|BQ741504.1|BQ741504
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|209706839|gb|BW653131.1|BW653131
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|16282501|gb|BI945051.1|BI945051
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|151394964|gb|EV264835.1|EV264835
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|17021507|gb|BM092541.1|BM092541
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|298172778|gb|HO020332.1|HO020332
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCTGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|12772612|gb|BG237466.1|BG237466
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|209706840|gb|BW653132.1|BW653132
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|22540234|gb|BU090077.1|BU090077
EST:     ATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: ATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|13788209|gb|BG650801.1|BG650801
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192298114|gb|FG991394.1|FG991394
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|9258634|gb|BE346781.1|BE346781
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|14259571|gb|BG882479.1|BG882479
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192322932|gb|FK016663.1|FK016663
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|9901461|gb|BE610429.1|BE610429
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|13181069|gb|BG352409.1|BG352409
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAA-GCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|37994771|gb|CF806360.1|CF806360
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|208071953|gb|GD867687.1|GD867687
EST:     AGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: AGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|6725501|gb|AW309900.1|AW309900
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgattttagcttaatttaatctaatacactgattgtgccatgttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
                              cactgat  putative branch site (score: 3)
      attttagcttaattta  TA-rich tract