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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagcttcagattgtcatttcattacatgattattattctcactgttgcttgtgtgtccaaattttatgcttatttcgttaaacattcactaattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGAC

Basic information

species Glycine max
transcript GLYMA17G38220.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G38220.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0122g00430.t01 (Vitis vinifera), 3'ss of exon 2
agagcttcagattgtcatttcattacatgattattattctcactgttgcttgtgtgtccaa----attttatgcttatttcgttaaacattcactaattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGAC
     |  | ||| |   | | | |||  ||  ||  | |   ||||| ||     |  ||    ||| | |   |  ||  |   | |||| | ||  |||||  | |||||||||||||| || ||||| ||||||||||| ||  ||||||| || ||  ||||||| ||||| ||||| || |||||||| |||||||| 
---catggaaattatagctac-taacaaaatagtttattttgttgttgtttagtaatttaatgttattatgtatgtgatttatgttaaattctccaaacttcagTCTGTGGTATGGAGAAGAACGTCCTCGCTGGCTTGGTCCAATCCCATATGACTATCCTGCATATCTCACTGGAGAACTTCCTGGGGATTATGGCTTTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404614|gb|EV274428.1|EV274428
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|209718155|gb|BW677426.1|BW677426
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|15285088|gb|BI468979.1|BI468979
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|209716259|gb|BW657562.1|BW657562
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|151395535|gb|EV265412.1|EV265412
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|120491971|gb|EH220138.1|EH220138
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|10846954|gb|BF069679.1|BF069679
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|209714192|gb|BW679521.1|BW679521
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|22539788|gb|BU089631.1|BU089631
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|22540334|gb|BU090177.1|BU090177
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|22524231|gb|BU083042.1|BU083042
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|192297292|gb|FG990626.1|FG990626
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|20075945|gb|BQ094728.1|BQ094728
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|209703879|gb|BW667920.1|BW667920
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|151404020|gb|EV273830.1|EV273830
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|120533754|gb|EH261887.1|EH261887
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|6727137|gb|AW311491.1|AW311491
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGCCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: gi|13481342|gb|BG510685.1|BG510685
EST:     GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG                         CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttgtgtgtccaaattttatgcttatttcgttaaacattcactaattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGAC
                                          cactaat  putative branch site (score: 2)
                                                ttttc  CT-rich tract
              aaattttatgcttatt  TA-rich tract