1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agagcttcagattgtcatttcattacatgattattattctcactgttgcttgtgtgtccaaattttatgcttatttcgttaaacattcactaattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGAC
species | Glycine max |
transcript | GLYMA17G38220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|151404020|gb|EV273830.1|EV273830
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|209716259|gb|BW657562.1|BW657562
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|10846954|gb|BF069679.1|BF069679
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|15285088|gb|BI468979.1|BI468979
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|151395535|gb|EV265412.1|EV265412
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|22539788|gb|BU089631.1|BU089631
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|120533754|gb|EH261887.1|EH261887
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|209703879|gb|BW667920.1|BW667920
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|20075945|gb|BQ094728.1|BQ094728
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|6727137|gb|AW311491.1|AW311491
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGCCCTATTTCATATGAEST: gi|22524231|gb|BU083042.1|BU083042
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|22540334|gb|BU090177.1|BU090177
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|209714192|gb|BW679521.1|BW679521
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|151404614|gb|EV274428.1|EV274428
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|192297292|gb|FG990626.1|FG990626
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|209718155|gb|BW677426.1|BW677426
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAEST: gi|13481342|gb|BG510685.1|BG510685
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
EST: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAG CTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
genomic: GAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGgtaatccctc ... taattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGA
ttgcttgtgtgtccaaattttatgcttatttcgttaaacattcactaattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGAC
cactaat putative branch site (score: 2)
ttttc CT-rich tract
aaattttatgcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagcttcagattgtcatttcattacatgattattattctcactgttgcttgtgtgtccaaattttatgcttatttcgttaaacattcactaattttcagCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGAC
- -gcttcag
- - - - - - - - - - - -tacatga
- - - - - - - - - - - - - - - - - - - ctcactg
- - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcac