Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtgtgcgttgtttgatttctcttttttctattgttctcttgtttctggtgtctaaacgcacgcgtgttgttgtgattgcaaGGGAGTCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAATGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCACGGCTTATGGATATTATCATCAATTC

Basic information

species Glycine max
transcript GLYMA17G37820.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37820.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G24190.2 (Arabidopsis thaliana), 3'ss of exon 2
ggtgtgcgttgtttgatttctcttttttctattgttctcttgtttctggtgtctaaacgcacgcgtgttgttgtgattgcaaGGGAGTCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAATGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCACGGCTTATGGATATTATCATCAATTC-
 ||  | ||| | | | ||      |     ||   ||    || || |  |||   |  |  ||  ||  | |||| |  || ||||| |||||||| || ||||   | || || || || ||||||||||||||||||||||| || || || ||||||||||| ||||| ||||| || 
-gttagtgttctgttagtttcacggtagaactttcgcttggattgcttgaatcttgccttattcgaattcgtttgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTTTGAGTTCCAAGCTGAGGTTTCTCGGCTTATGGACATTATTATCAACTCT

upper sequence: GLYMA17G37820.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 3'ss of exon 2
ggtgtgcgttgtttgatttctcttttttctattgttctcttgtttctggtgtctaaacgcacgcgtgttgttgtgattgca---aGGGAGTCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAATGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCACGGCTTATGGATATTATCATCAATTC-
 || |    | ||  | |      |||| | |  | |  |||||| || | |  | |  | |  ||| | || || ||  |   |||||  | ||||| ||||| || |||  ||||||   ||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||| || 
-gtttttacttttctagtgaatcattttttttcttccgtttgtttttgttttacatat-ctcaagtgcttttctgttttgatttagGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTTGAGTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCT

upper sequence: GLYMA17G37820.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S126_38V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------------------------------------------------------------------ggtgtgcgttgtttgatttctcttttttctattgttctcttgtttctggtgtctaaacgcacgcgtgttgttgtgattgcaaGGGAGTCGGAGT-CGATCTCGAAGAGATCTCTCCGGAGCAATGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCACGGCTTATGGATATTATCATCAATTC-
                                                                                                              |||      ||||        | | | | |||  |     ||  || || |     |    | |||| | |  ||     | ||||  |  |  ||  || ||||    |||| | |||||||| |||||||||||||||||||| ||||| ||| || | |||||||| |||||| | || 
gtacattacatgagatcactggtttcatgtatctgtgtatgtaacctctcttggggttctacttctggaaagattttaaacagttaattgtgaaaattagtcattgatcatgtcatgcatttggaagtcactctatttgttgcacgtaaattcatgctgacagtgagggttcttgttttcgacatgcagGGAGAGTGAGTCTATGACTTCCAAGAA---TCTCAGAAGCAATGCTGAGAAGTTTGAGTTCCAAGCTGAAGTCTCAAGGTTGATGGATATCATCATCCACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctattgttctcttgtttctggtgtctaaacgcacgcgtgttgttgtgattgcaaGGGAGTCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAATGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCACGGCTTATGGATATTATCATCAATTC
                       gtctaaa  putative branch site (score: 3)