Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccaatcccctgctaacaaacaaaaaactaacagtattaacaactaacatttgccgataaaaaataaacgccttaacctaattttcctcaatttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG

Basic information

species Glycine max
transcript GLYMA17G37730.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196591|gb|HO041334.1|HO041334
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|31474478|gb|CD416506.1|CD416506
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACNAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|120494113|gb|EH222280.1|EH222280
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|208261961|gb|GE057908.1|GE057908
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|151412034|gb|EV281845.1|EV281845
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|208081831|gb|GD879459.1|GD879459
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|16345364|gb|BI970959.1|BI970959
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|12773864|gb|BG238791.1|BG238791
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|298170230|gb|HO018854.1|HO018854
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|298167144|gb|HO010583.1|HO010583
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|38193189|gb|CF922395.1|CF922395
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|21602650|gb|BQ612981.1|BQ612981
EST:     GAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: GAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|8283304|gb|BE020865.1|BE020865
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|6666885|gb|AW278344.1|AW278344
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|7795478|gb|AW780875.1|AW780875
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|15200385|gb|BI424322.1|BI424322
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|31312367|gb|CD397570.1|CD397570
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTNATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|17519104|gb|BM188146.1|BM188146
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|193460745|gb|FK427514.1|FK427514
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGNGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|4285580|gb|AI440924.1|AI440924
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|20448913|gb|BQ253037.1|BQ253037
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTATACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|17153474|gb|BM143407.1|BM143407
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|120494291|gb|EH222458.1|EH222458
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|192322713|gb|FK014404.1|FK014404
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|120494235|gb|EH222402.1|EH222402
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|151412841|gb|EV282653.1|EV282653
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|10236137|gb|BE804955.1|BE804955
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|209699340|gb|BW664059.1|BW664059
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|192297663|gb|FG989582.1|FG989582
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|26269345|gb|CA820408.1|CA820408
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|298169760|gb|HO021120.1|HO021120
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|298187150|gb|HO034299.1|HO034299
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|31462386|gb|CD404414.1|CD404414
EST:     ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
EST: gi|9204083|gb|BE330307.1|BE330307
EST:     ATACTACGTTCCTCTCGAGGACTCCGATAAGCACAAGGTCGAATACTAGG                         TTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT
genomic: ATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttc ... atttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatttgccgataaaaaataaacgccttaacctaattttcctcaatttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG
                                    ttttcctcaatttc  CT-rich tract
           ataaaaaataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccaatcccctgctaacaaacaaaaaactaacagtattaacaactaacatttgccgataaaaaataaacgccttaacctaattttcctcaatttcgcaggTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGG

- - - cccctgc
- - - - - - - - -aaacaaa
- - - - - - - - - - - - - actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttaac