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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacatgatgaagaatatcaattactaatggaagttaatggtgtaactgacttgtgattgatagtttttatacttctgaattaatatttttttgttacagGCCAAAAATCTGGAACAACTGTCACCTTTGTCATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTCCTTGAATCTTCTGA

Basic information

species Glycine max
transcript GLYMA17G36150.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G36150.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os09g28560.1 (Oryza sativa), 3'ss of exon 2
aaacatgatgaagaatatcaattactaatggaagttaatggtgtaactgacttgt-gattgatagtttttatactt-ctgaattaatatttttt--tgttacagGCCAAAAATCTGGAACAACTGTCACCTTTGTCATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTCCTTGAATCTTCTGA
     |  |  |  || ||  |||    |  |   | || | ||| |||    || || ||||  ||||| |  || |||||  | | | ||||  |||| |||   |||  ||||| || ||||| || |||||  | ||||| |  ||||||||||| || ||||||||||||||||| |||||| | || |||||| ||||
--ctcttctttaagatgtcttttag-gttatagccttatag-gtacctgtaaagttgagtgatgctttttctctttactgaagcactctcttttgctgtttcagCGGAAACTTCTGGTACCACTGTTACATTTGTAGTAATAGATGAGTGGGTTGTAACGGTAGCATCAGTTGGTGATTCACGTTGCATACTAGAATCTGCTGA

upper sequence: GLYMA17G36150.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g27780.1 (Oryza sativa), 3'ss of exon 2
------------------------------------------------------------------------------------aaacatgatgaagaatatcaattactaatggaagttaatggtgtaactgacttgtgattgatagtttttatacttctgaattaatatttttttgttacagGCCA-AAAATCTGGAACAACTGTCACCTTTGTCATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTCCTTGAATCTTCTGA
                                                                                       | |   ||  ||||||  || || ||  | |   |     | | ||  |||| ||  |       |    |    | | | | ||    ||||    ||       || || || ||||| || ||||| || ||||| ||||||||||| || || ||||||||||| |||||||| ||  |||| |||||| ||||
gtattattctttcactaagctgataacgatttagaggatgtgcatgtaatttagaggcttttagttttctttgttcatattctcccccttttggacaaatatc--tttctgatttatgaatacatgatcagtg--ttgttatacacttgcactgcggtgtaaactgattgttaccatgttttcagCGGCGCGCTCAGGGACCACTGTGACTTTTGTTATAATAGATGGATGGGTTGTCACTGTAGCATCAGTTGGCGATTCCCGCTGTATCCTAGAATCTGCTGA

upper sequence: GLYMA17G36150.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G052699_T02 (Zea mays), 3'ss of exon 2
---aaacatgatgaagaatatcaattactaatggaagttaatggtgtaactgacttgtgattgatagtttttatacttctgaattaatatttttttgttacagGCCAAAAATCTGGAACAACTGTCACCTTTGTCATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTCCTTGAATCTTCTGA
     ||  ||| |  | |  ||  |  |     | ||  |   || |   ||    |  ||     ||  ||||         |    || | || ||||||  |     || || |||||||| || |||||||| ||||| |||| |||  | || |||||||||||||||||||||||||| || ||  || ||   | 
ctactactagattat-actgccatatgttttaccatgtggactatg-acgagaaccatctttacgcattactatatcgtatctgttgggttgtctt-ttacagCACGTTCTTCAGGGACAACTGTGACATTTGTCATAATAGATGGATTGGTCATCACTGTTGCATCAGTTGGTGATTCCCGTTGTGTACTACAAGCTGAAGG

upper sequence: GLYMA17G36150.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G044382_T01 (Zea mays), 3'ss of exon 2
aaacatgatgaagaatatcaat-tactaatggaagttaatggtgt---aactgacttgtgatt-gatagtttttatacttctgaattaatatttttttgttacagGCCAAAAATCTGGAACAACTGTCACCTTTGTCATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTCCTTGAATCTTCTGA
  |||| ||| || | | || |     |   ||      | || |   |||  ||  | |||  |||     |  |    |||   |    | | | | || |||  ||    || || ||||| || ||  ||| ||| || || || |  |||||||| |||||||| ||||||||||| ||||| ||||||||| ||   | 
--acatcatgcagcaaaccagtacgagagctgagtccttttgtttttgaaccaacaagagatgagatgagcctcgtttgcctg---ttccgtgtatatatttcagCTCATTCCTCGGGGACAACCGTGACGCTTGCCATAATTGATGGCTCCGTTGTAACTGTTGCATCTGTTGGTGATTCACGTTGTGTCCTTGAAGCTGAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgacttgtgattgatagtttttatacttctgaattaatatttttttgttacagGCCAAAAATCTGGAACAACTGTCACCTTTGTCATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTCCTTGAATCTTCTGA
                                         tttttttgtt  CT-rich tract
           attgatagtttttata  TA-rich tract