Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccatgattctactcaatttggccaattttattgtgttctctgacaatgctatcgtgtcgtgtatgagtaatgattatttgggtttgtatgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGACTTTGTTAAGGTTGCCTTAGGGAAGATGAATCCGCAGATTGCTTTCATG

Basic information

species Glycine max
transcript GLYMA17G36080.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G36080.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g10520.t01 (Vitis vinifera), 3'ss of exon 2
------ttccatgattctactcaatttggccaattttattgtgttctctgacaatgctatcgtgtcgtgtatgagtaatgattatttgggtttgtatgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGACTTTGTTAAGGTTGCCTTAGGGAAGATGAATCCGCAGATTGCTTTCATG
      ||   | |||  ||    |      || ||    |     |   |  | |      |  |||| | |  | |   ||  || |||| |||   || ||||| | || |||||||| |||||||||||  | ||||| || |||||||| || |||||||||||||||   |||||||||||||| || |||||||| || 
tcgaaattgactaattgcacattctccaaa-aacttcgccggaagttggaaggaaggatgaatcacgtgga-gtttgacattttctttggttggta---atctagGGCCGTACGAAGGAGGGAAGCCTGATGCCACCTTTTCTTTCAAGGATGAAGATTTTGTTAAGGTTGCCACTGGGAAGATGAATCCCCAAATTGCTTTTAT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589387|gb|AW705162.1|AW705162
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|163922977|gb|EH040184.1|EH040184
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298185911|gb|HO031072.1|HO031072
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|31466571|gb|CD408599.1|CD408599
EST:     GACGAGGTTGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|151410321|gb|EV280136.1|EV280136
EST:     GACAAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTGATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|6482924|gb|AW202192.1|AW202192
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|31476255|gb|CD418283.1|CD418283
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|192312105|gb|FK003868.1|FK003868
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGCCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|192298352|gb|FG991772.1|FG991772
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|17400543|gb|BM177325.1|BM177325
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298182530|gb|HO031265.1|HO031265
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|7925588|gb|AW831614.1|AW831614
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298191660|gb|HO039139.1|HO039139
EST:     GGCGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|213600426|gb|DB966177.1|DB966177
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|209701152|gb|BW652654.1|BW652654
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|58019938|gb|CX706680.1|CX706680
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|6482685|gb|AW201924.1|AW201924
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|7692378|gb|AW760486.1|AW760486
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|9258893|gb|BE347040.1|BE347040
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298171229|gb|HO016261.1|HO016261
EST:     GACGTGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|15813697|gb|BI785972.1|BI785972
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTA-GGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|9898567|gb|BE607535.1|BE607535
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298199105|gb|HO042468.1|HO042468
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|151407631|gb|EV277446.1|EV277446
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|16347221|gb|BI972816.1|BI972816
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|7692459|gb|AW760565.1|AW760565
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|192312106|gb|FK003869.1|FK003869
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGCCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|9899163|gb|BE608190.1|BE608190
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|8826960|gb|BE210690.1|BE210690
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298170873|gb|HO015849.1|HO015849
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298199488|gb|HO042851.1|HO042851
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|26046013|gb|CA783381.1|CA783381
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298191833|gb|HO035915.1|HO035915
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298193616|gb|HO040264.1|HO040264
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|58022941|gb|CX709682.1|CX709682
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|7284134|gb|AW596732.1|AW596732
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|19053456|gb|BM732123.1|BM732123
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298170473|gb|HO019097.1|HO019097
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATT-AAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298192416|gb|HO036498.1|HO036498
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|19269387|gb|BM885643.1|BM885643
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298179269|gb|HO027740.1|HO027740
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GACATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298185484|gb|HO030697.1|HO030697
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298190112|gb|HO032233.1|HO032233
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATT-AAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298166716|gb|HO010155.1|HO010155
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|15813880|gb|BI786155.1|BI786155
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|17022614|gb|BM093648.1|BM093648
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|151410541|gb|EV280356.1|EV280356
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|58022726|gb|CX709467.1|CX709467
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298172992|gb|HO019991.1|HO019991
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCGTATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298166080|gb|HO009051.1|HO009051
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298181796|gb|HO025971.1|HO025971
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA
EST: gi|298174486|gb|HO014631.1|HO014631
EST:     GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG                         GTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGA
genomic: GACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGttagctttgc ... tgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgctatcgtgtcgtgtatgagtaatgattatttgggtttgtatgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGACTTTGTTAAGGTTGCCTTAGGGAAGATGAATCCGCAGATTGCTTTCATG
                      agtaatgattattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttccatgattctactcaatttggccaattttattgtgttctctgacaatgctatcgtgtcgtgtatgagtaatgattatttgggtttgtatgtatttaggGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGACTTTGTTAAGGTTGCCTTAGGGAAGATGAATCCGCAGATTGCTTTCATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- ccatgat
- - - - - ctactca
- - - - - - - - - - - - - - - - -tgtgttc
- - - - - - - - - - - - - - - - - - - - - - -caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg