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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctgaaacaacatgctttgtattgcagtgtttaatttatcatggatactctatagtctattctttcactgtgtaggcttgttgttattggtttaatcattttgtctcaccctttgtttgttgtctatttgccttttcttgtatttttctcctctctacatatacagGGTTATTCCAAAAGCTCTCATGCCTCTTGAG

Basic information

species Glycine max
transcript GLYMA17G34510.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312708|gb|FK004396.1|FK004396
EST:     ATGGGCCTAATATCCCAGAGAATGTATGATGGAGGCTGCCATGTTCTAGG                         GGTTATTCCAAAAGCTCTCATGCCTCTTGAG
genomic: ATGGGCCTAATATCCCAGAGAATGTATGATGGAGGCTGCCATGTTCTAGGgtatgcctga ... acatatacagGGTTATTCCAAAAGCTCTCATGCCTCTTGAG
EST: gi|298195489|gb|HO043880.1|HO043880
EST:     ATGGGCCTAATATCCCAGAGAATGTATGATGGAGGCTGCCATGTTCTAGG                         GGTTATTCCAAAAGCTCTCATGCCTCTTGAG
genomic: ATGGGCCTAATATCCCAGAGAATGTATGATGGAGGCTGCCATGTTCTAGGgtatgcctga ... acatatacagGGTTATTCCAAAAGCTCTCATGCCTCTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttgttgtctatttgccttttcttgtatttttctcctctctacatatacagGGTTATTCCAAAAGCTCTCATGCCTCTTGAG
           tctatttgccttttct  CT-rich tract
                     ttttcttgtattttt  TA-rich tract