1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgaatctctgatagttaccatgagtgattcttatttgttgtgtattctgttatttgcatttgaaagaatgttaagcctaaaataatacggtaaattacagGCTGGAAGATACAAAAACCCTGAAGAAAACGCCTTCTTCCCAGAAAATTTACCACCATCAATTGTGCCATCTTACTCCTTCAAACAG
species | Glycine max |
transcript | GLYMA17G33940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCATTGGTAGAATTTGTTGTTAAGAATACAGAGGCCATTCAAGCTAAG GCTGGAAGATACAAAAACCCTGAAGAAAACGCCTTCTTCCCAGAAAATTTAEST: gi|192322433|gb|FK014914.1|FK014914
genomic: GCTCATTGGTAGAATTTGTTGTTAAGAATACAGAGGCCATTCAAGCTAAGgtactgtctg ... taaattacagGCTGGAAGATACAAAAACCCTGAAGAAAACGCCTTCTTCCCAGAAAATTTA
EST: GCTCATTGGTAGAATTTGTTGTTAAGAATACAGAGGCCATTCAAGCTAAG GCTGGAAGATACAAAAACCCTGAAGAAAACGCCTTCTTCCCAGAAAATTTA
genomic: GCTCATTGGTAGAATTTGTTGTTAAGAATACAGAGGCCATTCAAGCTAAGgtactgtctg ... taaattacagGCTGGAAGATACAAAAACCCTGAAGAAAACGCCTTCTTCCCAGAAAATTTA
tctgttatttgcatttgaaagaatgttaagcctaaaataatacggtaaattacagGCTGGAAGATACAAAAACCCTGAAGAAAACGCCTTCTTCCCAGAAAATTTACCACCATCAATTGTGCCATCTTACTCCTTCAAACAG
gcctaaa putative branch site (score: 3)
taaaataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatctctgatagttaccatgagtgattcttatttgttgtgtattctgttatttgcatttgaaagaatgttaagcctaaaataatacggtaaattacagGCTGGAAGATACAAAAACCCTGAAGAAAACGCCTTCTTCCCAGAAAATTTACCACCATCAATTGTGCCATCTTACTCCTTCAAACAG
- - - -ctgatag
- - - - - - - - - - tgagtga
- - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa