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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtggtttgtttgatgcttagtatcattcttactggaattaatgtgatgaaaagaaatatatttcttgtttgttgaaatctgtagCAATGGGGCACTTCTTCAAGTACTCACAGGAAGCTTATTTTCTGAGAAAATACCTAAG

Basic information

species Glycine max
transcript GLYMA17G33600.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402299|gb|EV272112.1|EV272112
EST:     TTGTCACCTGCTCAGCTTGAAGACCTTCCTCTTTTCTCTATTGGTCATAG                         CAATGGGGCACTTCTTCAAGTACTCACAGGAAGCTTATTTTCTGAGAAAAT
genomic: TTGTCACCTGCTCAGCTTGAAGACCTTCCTCTTTTCTCTATTGGTCATAGgttggtggtt ... aaatctgtagCAATGGGGCACTTCTTCAAGTACTCACAGGAAGCTTATTTTCTGAGAAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactggaattaatgtgatgaaaagaaatatatttcttgtttgttgaaatctgtagCAATGGGGCACTTCTTCAAGTACTCACAGGAAGCTTATTTTCTGAGAAAATACCTAAG
      aattaatgtgatgaaa  TA-rich tract