Sequence
atgc intronic sequence ATGC exonic sequence...ccttaattgtttttgaattaaagaattcattaattttccaccatgtttgttttaatgcccacatgaactagttttaatgaattgtttctctttcaaccagCCGCAGATCCAAATGGCATGGAAGAATTTAGATCTGGTTGGGATGAAGAGCTGAGCTGTATGCTGCAAATAAGTATCAAGGGGCATTTTGTTCCCATTAT
Basic information
species | Glycine max |
transcript | GLYMA17G33310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193340316|gb|FK308231.1|FK308231EST: TTCAAAGAGCCTGCCATTT-GAAGAAATTGCAGCTAGGAAGAGAGTCAAG CCGCAGATCCAAATGGCATGGAAGAATTTAGATCTGGTTGGGATGAAGAGC
genomic: TTCAAAGAGCCTGCCATTTTGAAGAA-TTGCAGCTAGGAAGAGAGTCAAGgttgaagaga ... tttcaaccagCCGCAGATCCAAATGGCATGGAAGAATTTAGATCTGGTTGGGATGAAGAGC
EST:
gi|193418432|gb|FK383538.1|FK383538EST: CTTCAAAGAGCCTGCCA-TTTGAAGAATTGCAGCTAGGAAGAGAGTCAAG CCGCAGATCCAAATGGCATGGAAGAATTTAGATCTGGTTGGGATGAAGAGC
genomic: CTTCAAAGAGCCTGCCATTTTGAAGAATTGCAGCTAGGAAGAGAGTCAAGgttgaagaga ... tttcaaccagCCGCAGATCCAAATGGCATGGAAGAATTTAGATCTGGTTGGGATGAAGAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgttttaatgcccacatgaactagttttaatgaattgtttctctttcaaccagCCGCAGATCCAAATGGCATGGAAGAATTTAGATCTGGTTGGGATGAAGAGCTGAGCTGTATGCTGCAAATAAGTATCAAGGGGCATTTTGTTCCCATTAT
ttttaat putative branch site (score: 3)
ttgtttctctttc putative PPT
ttttaatgaattgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccttaattgtttttgaattaaagaattcattaattttccaccatgtttgttttaatgcccacatgaactagttttaatgaattgtttctctttcaaccagCCGCAGATCCAAATGGCATGGAAGAATTTAGATCTGGTTGGGATGAAGAGCTGAGCTGTATGCTGCAAATAAGTATCAAGGGGCATTTTGTTCCCATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - -ttccacc
- - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccaca