1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taaaagtagttagtgagaattaaggaatgtgaggacacagaaactgtgtttgtgtgtttgtgcatgcatactaatataatgtctatcaattttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAAGGCATACCTATGGCTCCTCCTGATCCAATTCTCGGAGTTTCCGAGGCGT
species | Glycine max |
transcript | GLYMA17G33050.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAAEST: gi|120532068|gb|EH260201.1|EH260201
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
EST: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAAEST: gi|207720079|gb|GD702578.1|GD702578
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
EST: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAAEST: gi|120532359|gb|EH260492.1|EH260492
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
EST: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAAEST: gi|209711312|gb|BW683849.1|BW683849
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
EST: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
gtgtttgtgtgtttgtgcatgcatactaatataatgtctatcaattttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAAGGCATACCTATGGCTCCTCCTGATCCAATTCTCGGAGTTTCCGAGGCGT
tactaat putative branch site (score: 1)
ttttgtttc putative PPT
taatataatgtctatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaagtagttagtgagaattaaggaatgtgaggacacagaaactgtgtttgtgtgtttgtgcatgcatactaatataatgtctatcaattttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAAGGCATACCTATGGCTCCTCCTGATCCAATTCTCGGAGTTTCCGAGGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC