1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgaattaaaatcaaattttaatatagttataagtatcaagtacatatttaaatcatattatgtcgttgttgggaactagttttaactgcatcaagaacagGGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAG
species | Glycine max |
transcript | GLYMA17G30770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTTTATGCCACCTAT GGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAEST: gi|17154108|gb|BM144041.1|BM144041
genomic: TGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTTTATGCCACCTATgtaagtctca ... tcaagaacagGGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTA
EST: TGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTTTATGCCACCTAT GGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTA
genomic: TGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTTTATGCCACCTATgtaagtctca ... tcaagaacagGGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTA
atttaaatcatattatgtcgttgttgggaactagttttaactgcatcaagaacagGGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAG
ttttaac putative branch site (score: 2)
aatcatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaattaaaatcaaattttaatatagttataagtatcaagtacatatttaaatcatattatgtcgttgttgggaactagttttaactgcatcaagaacagGGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC