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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaaacaatgcttcttcatcagaagacaagtcactagATTTGTCATTTAGTGAGGATGGAAGAAGTGGTACATTTATGATTGGGAATGAACACTTCCCAGCTTCTCTATTGGATCTTCCTTGCGTTGTTGAATCCTA

Basic information

species Glycine max
transcript GLYMA17G29810.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G29810.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g46020.2 (Oryza sativa), 3'ss of exon 1
---------------------------------------------gtatgaaaacaatgcttcttcatcagaagacaagtcactagATTTGTCATTTAGTGAGGATGGAAGAAGTGGTACATTTATGATTGGGAATGAACACTTCCCAGCTTCTCTATTGGATCTTCCTTGCGTTGTTGAATCCTA---------------
                                              | |  |   |||  || || |   |  ||   ||   |   |||      ||  ||||||||||||||||| |||||||||||||| ||||||  ||| ||||| ||||| || ||||| ||    ||| | || || ||               
tggatacaacttgtattgtaatactctagtactgttatcactgaaattttcagttaatcttttttgacttgtggattggt-gttcttttttcgtgctacagAGGATGGAAGAAGTGGCACATTTATGATTGGAAATGAAAGCTTTCCAGCATCTCTCTTAGATCTCCCAACTGTTATGGAGTCATACAAGACATACAATGA

upper sequence: GLYMA17G29810.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g28010.1 (Oryza sativa), 3'ss of exon 1
---------------------------------------------gtatgaaaacaatgcttcttcatcagaagacaagtcactagATTTGTCAT-TTAGTGAGGATGGAAGAAGTGGTACATTTATGATTGGGAATGAACACTTCCCAGCTTCTCTATTGGATCTTCCTTGCGTTGTTGAATCCTA---------------
                                              | |  |   |||  || || | |    |   | | |    |||| ||||  ||  ||||||||||||| ||| |||||||||||||||||||||  ||| || || || || |||||||| ||    ||||| || || ||               
cacaacttaaattataataccctggtattgttatcaggatgtgaattttttatctaatatttgttgaacctgtgg--attgatggtatttttcatgctatagAGGATGGAAGAAATGGCACATTTATGATTGGGAATGAAAGCTTTCCTGCATCACTCTTGGATCTCCCAACTGTTGTGGAGTCATACAAGACATATGATGA

upper sequence: GLYMA17G29810.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g28010.2 (Oryza sativa), 3'ss of exon 1
-------------------------------------------gtatgaaaacaatgcttcttcatcagaagacaagtcactagATTTGTCAT-TTAGTGAGGATGGAAGAAGTGGTACATTTATGATTGGGAATGAACACTTCCCAGCTTCTCTATTGGATCTTCCTTGCGTTGTTGAATCCTA-----------------
                                            | |  |   |||  || || | |    |   | | |    |||| ||||  ||  ||||||||||||| ||| |||||||||||||||||||||  ||| || || || || |||||||| ||    ||||| || || ||                 
caacttaaattataataccctggtattgttatcaggatgtgaattttttatctaatatttgttgaacctgtgg--attgatggtatttttcatgctatagagGATGGAAGAAATGGCACATTTATGATTGGGAATGAAAGCTTTCCTGCATCACTCTTGGATCTCCCAACTGTTGTGGAGTCATACAAGACATATGATGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgaaaacaatgcttcttcatcagaagacaagtcactagATTTGTCATTTAGTGAGGATGGAAGAAGTGGTACATTTATGATTGGGAATGAACACTTCCCAGCTTCTCTATTGGATCTTCCTTGCGTTGTTGAATCCTA
                                          tatgaaaa  TA-rich tract