1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cagaattacttttttctttctacgtttttgaaccatttaataatactgacatgatgttaaccacacaacaaaatactgaaatactaattattggaagcagGTCACCATTCACTAGGAGAGGTATGTATGACAAGTCATATGGAGAAATTTCAGTGCCAGATTCTGACATAAGCTTTGTAAGCTCTAGAAGGCCAAGCACA
species | Glycine max |
transcript | GLYMA17G28970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACAGGATGCACCCCGTAAATCAAATGATGGAACAACAGATTCCTTCAG GTCACCATTCACTAGGAGAGGTATGTATGACAAGTCATATGGAGAAATTTCEST: gi|19348647|gb|BM893179.1|BM893179
genomic: TCACAGGATGCACCCCGTAAATCAAATGATGGAACAACAGATTCCTTCAGgtaatgacat ... ttggaagcagGTCACCATTCACTAGGAGAGGTATGTATGACAAGTCATATGGAGAAATTTC
EST: TCACAGGATGCACCCCGTAAATCAAATGATGGGACAACAGATTCCTTCAG GTCACCATTCACTANGAGAGGTATGTATGACAAGTCATATGGAGAAATTTC
genomic: TCACAGGATGCACCCCGTAAATCAAATGATGGAACAACAGATTCCTTCAGgtaatgacat ... ttggaagcagGTCACCATTCACTAGGAGAGGTATGTATGACAAGTCATATGGAGAAATTTC
ctgacatgatgttaaccacacaacaaaatactgaaatactaattattggaagcagGTCACCATTCACTAGGAGAGGTATGTATGACAAGTCATATGGAGAAATTTCAGTGCCAGATTCTGACATAAGCTTTGTAAGCTCTAGAAGGCCAAGCACA
tactaat putative branch site (score: 1)
aaaatactgaaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaattacttttttctttctacgtttttgaaccatttaataatactgacatgatgttaaccacacaacaaaatactgaaatactaattattggaagcagGTCACCATTCACTAGGAGAGGTATGTATGACAAGTCATATGGAGAAATTTCAGTGCCAGATTCTGACATAAGCTTTGTAAGCTCTAGAAGGCCAAGCACA
- - - - - - - - - - - - - - - - ccattta
- - - - - - - - - - - - - - - - - - - - - -tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatac