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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctcccttaaacccctggagttactcctactcgaaaggagattatcacccccttatcaatggtgctttattcaattctctcatttctgtttctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG

Basic information

species Glycine max
transcript GLYMA17G26900.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401073|gb|EV270887.1|EV270887
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|14259240|gb|BG882148.1|BG882148
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|151412705|gb|EV282517.1|EV282517
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|16105581|gb|BI893321.1|BI893321
EST:     GATTTATTAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|298190184|gb|HO032305.1|HO032305
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|254342909|gb|GR859071.1|GR859071
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|23064041|gb|BU578814.1|BU578814
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|5753671|gb|AI960958.1|AI960958
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAA                         GGAATAAAAGAAGACACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|11687742|gb|BF595418.1|BF595418
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|298179735|gb|HO024950.1|HO024950
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|298197455|gb|HO044934.1|HO044934
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|151402880|gb|EV272693.1|EV272693
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGTTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|27424702|gb|CA936222.1|CA936222
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|6482381|gb|AW201644.1|AW201644
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|11412862|gb|BF424873.1|BF424873
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
EST: gi|33390191|gb|CA853398.1|CA853398
EST:     GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG                         GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG
genomic: GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAGgtgtgtgctg ... tctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacccccttatcaatggtgctttattcaattctctcatttctgtttctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG
                             ttctctcatttctgtt  CT-rich tract
                    tttattcaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctcccttaaacccctggagttactcctactcgaaaggagattatcacccccttatcaatggtgctttattcaattctctcatttctgtttctgctacagGGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT