1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaactaacattttcattctgcaaaattattgtcataggttgtgttgtatggcttggtccattatttggtgttcttaacatatctttgttgctaatggtaaagatttggttttgtttgttttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG
species | Glycine max |
transcript | GLYMA17G18430.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG CGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCAEST: gi|31472066|gb|CD414094.1|CD414094
genomic: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
EST: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG CGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCAEST: gi|209714170|gb|BW679499.1|BW679499
genomic: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
EST: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG CGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
genomic: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
taacatatctttgttgctaatggtaaagatttggttttgtttgttttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG
tgctaat putative branch site (score: 2)
tttgtttt putative PPT
ttttgtttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactaacattttcattctgcaaaattattgtcataggttgtgttgtatggcttggtccattatttggtgttcttaacatatctttgttgctaatggtaaagatttggttttgtttgttttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA