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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattataataatgataataatttacatacatgttcctttcctatttgttacttatttgctttgactcttatttgtttggattttgcttttatttgcaattctgaagaagggtgagtgatttgtttgtttgatttttggtgtgtatagGTTAGGAGACTGGAAGGCGAAGGAGTGCCCTCAAAGCAAGCCGAGGCGATAACCGCTGCCATAACTGAGGTTTTGAATGACAGTCTCGAAAATGTGTCTC

Basic information

species Glycine max
transcript GLYMA17G17170.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17170.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G51090.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaattataataatgataataatttacatacatgttcctttcctatttgttacttatttgctttgactcttatttgtttggat--tttgcttttatttgcaattctgaagaagggtgagtgatttgtttgtttgatttttggtgtgtatagGTTAGGAGACTGGAAGGCGAAGGAGTGCCCTCAAAGCAAGCCGAGGCGATAACCGCTGCCATAACTGAGGTTTTGAATGACAGTCTCGAAAATGTGTCTC
                                             ||| || ||     |  |||| |   |||   | ||||  | |  | |||  |  | |  | |   ||  |   | |   |    |||| | | || | |    ||||||||||  | ||||   ||||  |||| ||||||||||||||||| ||||||| ||| |||||||| ||| | || || ||  | | |  ||| || |
---------------------------------------------tttatt-ctagaccggattga-taaaattcaataggatgctatattattagatatagtcttaa--gagtatagttcaaaggagaatttggtatgtgattttc--agGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATAACCGGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaattctgaagaagggtgagtgatttgtttgtttgatttttggtgtgtatagGTTAGGAGACTGGAAGGCGAAGGAGTGCCCTCAAAGCAAGCCGAGGCGATAACCGCTGCCATAACTGAGGTTTTGAATGACAGTCTCGAAAATGTGTCTC
                                 gtttgat  putative branch site (score: 5)
                              tttgtttgattttt  TA-rich tract