Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattcgtttctatttataagaaacaaatcatagtgttaaatatattatttaaattacattcccctgaccttggtttatgaacaacttgtgcagATTCGACAGAGACCTAAAGTGGAGAACCGGGGTTGAGATTGTTCCAATCCAATGCAACAGTTCCAACAACTTCCAAATCACGGAGGCAGCATTGCAACAA

Basic information

species Glycine max
transcript GLYMA17G16990.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16990.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G22810.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtattcgtttctatttataagaaacaaatca--tagtgttaaatatattatttaaattacattcccctgaccttggtttatgaacaacttgtgcagATTCGACAGAGACCTAAAGTGGAGAACCGGGGTTGAGATTGTTCCAATCCAATGCAACAGTTCCAACAACTTCCAAATCACGGAGGCAGCATTGCAACAA
|| |||   | | | |  ||| | | || |  ||    | |  ||   |  | | |||| | | | ||     |  ||  ||| || ||      | ||| || || || || ||||| ||| ||||||||||||||||||| ||||||||| ||   ||| | |||   || |  || ||| |    ||| |  || ||
gttagtccac-tgtttgcttacacgtaaaatttccatcattcctacgaacttgacttaactaaaactc-----atgtttatttttgtac------ttcagGTTTGATAGGGATCTAAAATGGCGAACCGGGGTTGAGATTGTACCAATCCAAAGCTCAAGTACTAACGGGTTTCGCATAACGAAACTTGCACTCGAAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatattatttaaattacattcccctgaccttggtttatgaacaacttgtgcagATTCGACAGAGACCTAAAGTGGAGAACCGGGGTTGAGATTGTTCCAATCCAATGCAACAGTTCCAACAACTTCCAAATCACGGAGGCAGCATTGCAACAA
                       ccctgac  putative branch site (score: 3)
     attatttaaattacat  TA-rich tract