1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aagcagtacactgttggctttttatttttatttttattgaattctcttaattttcttcctctcaaaacctttactttttatttttcttcatttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA
species | Glycine max |
transcript | GLYMA17G16200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTG GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGEST: gi|192323740|gb|FK016046.1|FK016046
genomic: AAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTGgtaagatgtt ... tttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTG GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGEST: gi|298166624|gb|HO010063.1|HO010063
genomic: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTGgtaagatgtt ... tttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGEST: gi|120529270|gb|EH257404.1|EH257404
genomic: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTGgtaagatgtt ... tttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTG GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGEST: gi|298177779|gb|HO027332.1|HO027332
genomic: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTGgtaagatgtt ... tttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTG GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGEST: gi|14991048|gb|BI316721.1|BI316721
genomic: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTGgtaagatgtt ... tttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTG GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTGgtaagatgtt ... tttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
cttaattttcttcctctcaaaacctttactttttatttttcttcatttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA
tcttaat putative branch site (score: 3)
cctttactttttattt putative PPT
tttactttttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcagtacactgttggctttttatttttatttttattgaattctcttaattttcttcctctcaaaacctttactttttatttttcttcatttgtgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA
- - - - - -tgttggc