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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcgtctttccaatcaacccttttctgagtctcaatccgttttcttgttttctctgaaaaaaaattcatttgcatggtttttctttctcactgtcctggtggaaaaaatgatctttttgttctgttttttcatgtggtgtgtgttgaaaagggtttatcggttgtttgttgtgtctgattcgcagGTTGAATGCACGATCCCCAAGGATGATGGAACTCTGGTTTCCTATGTGGGATTCAGGATCCAACATGATAATGCCCGTGGTCCTATGAAGGGAGGGATTC

Basic information

species Glycine max
transcript GLYMA17G15740.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13478706|gb|BG508074.1|BG508074
EST:     TGGATTCCAAGCTTGAGAAGAGTCTCCTCATACCCTTCAGAGAAATCAAA                         GTTGAATGCACGATCCCCAAGGATGATGGAACTCTGGTTTCCTATGTGGGA
genomic: TGGATTCCAAGCTTGAGAAGAGTCTCCTCATACCCTTCAGAGAAATCAAAgtaatcgtct ... tgattcgcagGTTGAATGCACGATCCCCAAGGATGATGGAACTCTGGTTTCCTATGTGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtggtgtgtgttgaaaagggtttatcggttgtttgttgtgtctgattcgcagGTTGAATGCACGATCCCCAAGGATGATGGAACTCTGGTTTCCTATGTGGGATTCAGGATCCAACATGATAATGCCCGTGGTCCTATGAAGGGAGGGATTC
                                          gtctgat  putative branch site (score: 4)
             ttgaaaa  TA-rich tract