Sequence
atgc intronic sequence ATGC exonic sequence...tttttatatttctgaatcataatatgatcaaaagtccaaaactaaatccaaatcctggtgaacattataatgagattatggatttttttttgttgtctagGTGGTCTTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
Basic information
species | Glycine max |
transcript | GLYMA17G15270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G15270.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g01380.t01 (Vitis vinifera), 3'ss of exon 2
tttttatatttctgaatcataatatgatcaaaagtccaaaactaaatccaaatcctggtgaacattataa--tgagattatggatttttttttgttgtctagGTGGTCTTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
|| | | || || | |||| | || || || | || | | || | ||| |||| || | | ||||||||||||||| ||||| ||| | ||||| |||||||| ||||| || ||||| |||||||||||||||||| |||| ||| | || ||| | | |
--gttgtcaacttaaagca-gttttgattcatgtaccttttttagttcaggttttccacagtttaaatcagtctaaatctttgatgttttctttctctttagGTGGTCTTTGATTGCTGGAAGATTGCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGGAGAAGCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atccaaatcctggtgaacattataatgagattatggatttttttttgttgtctagGTGGTCTTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
tttttttttgttgtct CT-rich tract
attataatgagattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttatatttctgaatcataatatgatcaaaagtccaaaactaaatccaaatcctggtgaacattataatgagattatggatttttttttgttgtctagGTGGTCTTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - -ccaaaac
- - - - - - - - - - - - - - - - - - - - - - -atccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -cctggtg