Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagaattatgatgaaacaaaccttgtcagtaatgaataattgagttgcaccttgcttcacttgaatcttgattatgattatattcttataacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCAGTTCCAAAGGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC

Basic information

species Glycine max
transcript GLYMA17G15230.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 2
-tcagaattatgatgaaacaaacct-tgtcagtaatgaataattgagttgcaccttgcttcacttgaatcttgattatgattatattcttataaca-ttccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCAGTTCCAAAGGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC
  |  || | |  | | |     || | | | | |    | | ||  |||  |||    | |    ||| |||   || | ||| || | |      || ||||| || ||| ||||||||||||||||  |  | |||||| | ||||| ||||| || ||||||||||| ||||| |||||||   |||| ||| |||| |
agccaaaatgtattcacatgctgctgtctgattcacttttgaatgttttggcccta---taatccaaatattgtgcataactattttttgaccttgctttcagGGCTATGTGGTTTACCGTGTTCGCGTCAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATTACCC

upper sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 2
tcagaattatgatgaaacaaa-ccttgtcagtaatgaataattgagttgcaccttgcttcacttgaatcttgattatgattatattcttataa-cattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCAGTTCCAAAGGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC
      || || | | |     || ||   ||  |  ||| || |||  |  |    || |  |  || || ||   |  || ||  | | || | || |||||||| ||||| || ||||| || ||| || | |||||  | ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||| ||||
-tgattttctgtttacatttttccctgctggtgctctata-tttagtcactgcagcgttaatattcatattaatatcgtgtacatgttaacaatcttttcagGGTTATGTGATCTATCGTGTACGTGTAAGACGCGGTGGAAGGAAGAGGCCAGTCCCAAAGGGTATTGTGTATGGTAAGCCCACAAACCAAGGTGTCACTC

upper sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
--tcagaattatgatgaaacaaacct--tgtcagtaatgaataattgagttgcaccttgcttcacttgaatcttgattatgattatattcttataacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCAGTTCCAAAGGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC
  | |  | | |   ||  ||   ||  ||   |||||  ||||    |       |||||  |  |    |   | |   | | |     ||     || |||||||| |||||||| |||||||| ||  || | ||||| || ||||| || || || ||||| |||||||||||||||||||| |||||||||||||| |
tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatcta---cacaaatgacactctggatgtactgt-tttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700978|gb|BW664159.1|BW664159
EST:     GCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|4291856|gb|AI437679.1|AI437679
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|18732863|gb|BM527291.1|BM527291
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|7796843|gb|AW782237.1|AW782237
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|213600418|gb|DB970312.1|DB970312
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|17519617|gb|BM188659.1|BM188659
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192308858|gb|FK002082.1|FK002082
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|37995051|gb|CF806640.1|CF806640
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298177006|gb|HO023367.1|HO023367
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAGGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|151399666|gb|EV269537.1|EV269537
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|9899818|gb|BE608786.1|BE608786
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|58021396|gb|CX708137.1|CX708137
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|10843664|gb|BF066938.1|BF066938
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298190354|gb|HO032475.1|HO032475
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192325554|gb|FK019410.1|FK019410
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|8283106|gb|BE020659.1|BE020659
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298184555|gb|HO029768.1|HO029768
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCGG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGGGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192311613|gb|FK004854.1|FK004854
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|254326246|gb|GR840838.1|GR840838
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298189932|gb|HO038335.1|HO038335
EST:     GGTCTACTCGCCCAGATAAAGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298192749|gb|HO033183.1|HO033183
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|18848396|gb|BM567648.1|BM567648
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298183348|gb|HO028561.1|HO028561
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|8283849|gb|BE021408.1|BE021408
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|254326247|gb|GR840839.1|GR840839
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|254347715|gb|GR853964.1|GR853964
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298170969|gb|HO015945.1|HO015945
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192297935|gb|FG988377.1|FG988377
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|209698240|gb|BW667543.1|BW667543
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|209700977|gb|BW664158.1|BW664158
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298190387|gb|HO032508.1|HO032508
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|42723211|gb|CK769110.1|CK769110
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192322504|gb|FK014625.1|FK014625
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298174709|gb|HO014740.1|HO014740
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298198164|gb|HO039703.1|HO039703
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|16996740|gb|BM086112.1|BM086112
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298191943|gb|HO036025.1|HO036025
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192311612|gb|FK004853.1|FK004853
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298177853|gb|HO027406.1|HO027406
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|213589005|gb|DB973105.1|DB973105
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298192514|gb|HO036596.1|HO036596
EST:     GGTCTACTCGCCCAGACAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|13789041|gb|BG651632.1|BG651632
EST:     GATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298193387|gb|HO033821.1|HO033821
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192328403|gb|FK020114.1|FK020114
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAGGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192323265|gb|FK015271.1|FK015271
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|27424507|gb|CA936027.1|CA936027
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|6916241|gb|AW397771.1|AW397771
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298189943|gb|HO038346.1|HO038346
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298184118|gb|HO029331.1|HO029331
EST:     GGTCTACTCGCCCAGATAAGGCCCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|42722639|gb|CK768538.1|CK768538
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|5606140|gb|AI900238.1|AI900238
EST:     CGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: CGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192319846|gb|FK012936.1|FK012936
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192327050|gb|FK015217.1|FK015217
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|213604730|gb|DB956085.1|DB956085
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|209726711|gb|BW654826.1|BW654826
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298169137|gb|HO020497.1|HO020497
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298176915|gb|HO026922.1|HO026922
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298171073|gb|HO016105.1|HO016105
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|42722521|gb|CK768420.1|CK768420
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|254347716|gb|GR853965.1|GR853965
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|21675914|gb|BQ628265.1|BQ628265
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|192308857|gb|FK002081.1|FK002081
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|151413187|gb|EV282995.1|EV282995
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCATACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298192513|gb|HO036595.1|HO036595
EST:     GGTCTACTCGCCCAGACAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298173642|gb|HO016978.1|HO016978
EST:     GGTCTAGTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|7147120|gb|AW509042.1|AW509042
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGGCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|9899809|gb|BE608777.1|BE608777
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|58024460|gb|CX711201.1|CX711201
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|213588932|gb|DB969565.1|DB969565
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|151408730|gb|EV278538.1|EV278538
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|18733448|gb|BM527613.1|BM527613
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298179410|gb|HO027881.1|HO027881
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCCAAGCTG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|16997282|gb|BM086654.1|BM086654
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|298184535|gb|HO029748.1|HO029748
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTATGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCA
EST: gi|5058377|gb|AI736853.1|AI736853
EST:     GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAG                         GGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGGTGGCCGTAAGAGACC
genomic: GGTCTACTCGCCCAGATAAGGCTCGTCGCTTGGGTTTCAAGGCTAAGCAGgtgaggaaat ... aacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGG-TGGCCGTAAGAGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaccttgcttcacttgaatcttgattatgattatattcttataacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCAGTTCCAAAGGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC
                                         ttataac  putative branch site (score: 2)
                   aatcttgattatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagaattatgatgaaacaaaccttgtcagtaatgaataattgagttgcaccttgcttcacttgaatcttgattatgattatattcttataacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCAGTTCCAAAGGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC

- - - - - - - - acaaacc
- - - - - - - - - - - - - - - - - - - - - -agttgca