Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgcgttcagtagaaaataatatctatgttgtacatgtgacattaattcctttttcttgaatgtttaagtcatttatcttttttgatttgtgttaaatatctatgcatatgcttttttatctgtagGTTGATCTGTTGTTAGCAGAACCTTTCTATGTAGGGCATGATGGCATGCTTCCATGGCAGAACCTGCGGTTTTG

Basic information

species Glycine max
transcript GLYMA17G15030.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15030.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0154g00540.t01 (Vitis vinifera), 3'ss of exon 8
gtatgttgcgttcagtagaaaataatatctatgttgtacatgtgacattaattcctttttcttgaatgtttaagtcatttatcttttttgatttgtgttaaatatctatgcatatgcttttttatctgtagGTTGATCTGTTGTTAGCAGAACCTTTCTATGTAGGGCATGATGGCATGCTTCCATGGCAGAACCTGCGGTTTTG
                         |||   | || | | || |   || ||     | | |  |  | |   | ||   | |   |   | |||  || ||    | ||  | | || || | ||| |||||||| || ||| | | |||||||||||||   ||  |||| ||||||||||||||||||||||||||||||||
-------------------------tattcctcttttccttgagtattttatataaatatttcaa--gctcctgcca---accagctacaaattgaattcaagcagtgtgt-tttcctgttctttctttagGTTGACCTATTGATCGGAGAACCTTTCTATTATGGAAATGAAGGCATGCTTCCATGGCAGAACCTGCGGTTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatcttttttgatttgtgttaaatatctatgcatatgcttttttatctgtagGTTGATCTGTTGTTAGCAGAACCTTTCTATGTAGGGCATGATGGCATGCTTCCATGGCAGAACCTGCGGTTTTG
         ttttgat  putative branch site (score: 4)
                                        cttttttatct  putative PPT
       ttttttgatttgtgtt  TA-rich tract