Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttaaccgtgtcaagttagcgtaatgtaggattgaaacggcacttttttttgcagtgtttgtgagataagtttggaaaattttgcgtgtttgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG

Basic information

species Glycine max
transcript GLYMA17G15010.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15010.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G104907_T01 (Zea mays), 3'ss of exon 2
tttaaccgtgtcaagttagcgtaatgtaggattgaaacggcacttttttttgcagtgtttgtgagataagttt--ggaaaattttgcgtgtttgttttt-------cagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG
        | |   |    | |  ||  |  || || |   |  ||||  |   |    ||| | ||| |||   |||     |||  ||  |||||||       ||||||||||| || | ||| ||||||||||  || || || |||||||||||||||  ||| || ||||| ||||||||| | |
--------tattgtgccgtctttgtgctgt-ttaaatccttatattttgatcttgaaaatgtaacatatgttcaaggaggtgcttgtttgactgttttttattatccagGTGAAAACTACAAGTCCAAAGAAGTATTCGGTGCGACCCAACACTGGGGTTGTCTTGCCACGGTCTACCTGTGATGTTGTTG

upper sequence: GLYMA17G15010.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 2
--tttaaccgtgtcaagttagcgtaatgtaggattgaaacggcactttt----ttttgcagtgtttgtgagat--aagtttggaaaattttgcgtgtttgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG
    |   | |  |     | |  |  |||  ||  ||| |    ||||    || |||  || | | || ||  || ||| |||| || | ||||||       |||||||||||||| ||||||||||||||||||||||||||||| || ||  |||||  |||||| || || |||||  |  | |
aaaattttcttagcggccaaacagagggtaaaatgcaaatgtagattttgattttctgccatgatcgggatatttaaatttcgaaa-ttgttcgtgtt-------cagGTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193525054|gb|FK480167.1|FK480167
EST:     AATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAG                         GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
genomic: AATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAGgtaattttaa ... tgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
EST: gi|151393590|gb|EV263465.1|EV263465
EST:     CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAG                         GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
genomic: CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAGgtaattttaa ... tgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
EST: gi|151400266|gb|EV270080.1|EV270080
EST:     CAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAG                         GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
genomic: CAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAGgtaattttaa ... tgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
EST: gi|192308379|gb|FK000903.1|FK000903
EST:     CATGTTCTCTTCAATTGTCCAATAAGACCGGTAGCTATGTAGCCTTCAAG                         GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
genomic: CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAGgtaattttaa ... tgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
EST: gi|192320145|gb|FK012633.1|FK012633
EST:     CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAG                         GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
genomic: CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAGgtaattttaa ... tgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
EST: gi|298168811|gb|HO009741.1|HO009741
EST:     CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAG                         GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
genomic: CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAGgtaattttaa ... tgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
EST: gi|18721259|gb|BM523334.1|BM523334
EST:     CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAG                         GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT
genomic: CATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAGgtaattttaa ... tgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgcagtgtttgtgagataagtttggaaaattttgcgtgtttgtttttcagGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG
                                           tttgtttttc  CT-rich tract
                              aaaatttt  TA-rich tract