1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ccttgttttctcttgtataaattactattatatagcgttttttcccctgatgatgttatgatgaataaatttaccatactgaattgctctattgtgacagTGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATG
species | Glycine max |
transcript | GLYMA17G13040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAAT TGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAAEST: gi|6070502|gb|AW099889.1|AW099889
genomic: CTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATgtatgccaat ... attgtgacagTGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAA
EST: CTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAAT TGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAAEST: gi|192294212|gb|FG986301.1|FG986301
genomic: CTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATgtatgccaat ... attgtgacagTGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAA
EST: CTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAAT TGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAA
genomic: CTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATgtatgccaat ... attgtgacagTGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAA
cctgatgatgttatgatgaataaatttaccatactgaattgctctattgtgacagTGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATG
ccctgat putative branch site (score: 4)
ctctatt putative PPT
atgttatgatgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgttttctcttgtataaattactattatatagcgttttttcccctgatgatgttatgatgaataaatttaccatactgaattgctctattgtgacagTGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatact