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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttcttgattaccaattaatctttttttggtttgtgctgaacaaatagatgaaatggttttataatgtaattaattgtggcattttttgacaagactcggttgaatcatgtgttgcaataatatggttatgttggtatgagtgagagctgcatatattgatgtggtttattattcagGTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCTGATAACGCAAAACAGACAGGTGATTCTGCCTCTAGTGTTCTCAGCAATTG

Basic information

species Glycine max
transcript GLYMA17G12930.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336224|gb|CO980090.1|CO980090
EST:     TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAG                         GTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCTG
genomic: TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAGgtagtttctt ... tattattcagGTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCTG
EST: gi|17401988|gb|BM178770.1|BM178770
EST:     TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAG                         GTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCTG
genomic: TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAGgtagtttctt ... tattattcagGTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCTG
EST: gi|208123006|gb|GD923670.1|GD923670
EST:     TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAG                         GTGGCTGAAAGAGCACA
genomic: TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAGgtagtttctt ... tattattcagGTGGCTGAAAGAGCACA
EST: gi|208044501|gb|GD837929.1|GD837929
EST:     TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAG                         GTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCTG
genomic: TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAGgtagtttctt ... tattattcagGTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCTG
EST: gi|207833852|gb|GD807643.1|GD807643
EST:     TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAG                         GTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTC
genomic: TCCCACTGTTCCGACGAATGGCTTTCTGCCTCAATAGTTCTCATTATCAGgtagtttctt ... tattattcagGTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTC
EST: gi|5760773|gb|AI966136.1|AI966136
EST:     GCCTCAATAGTTCTCATTATCAG                         GTGTGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCT
genomic: GCCTCAATAGTTCTCATTATCAGgtagtttctt ... tattattcagGTG-GCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggttatgttggtatgagtgagagctgcatatattgatgtggtttattattcagGTGGCTGAAAGAGCACATTTGCTATGGAACAATGAGCACATTCTGAATCTGATAACGCAAAACAGACAGGTGATTCTGCCTCTAGTGTTCTCAGCAATTG
                                tattgat  putative branch site (score: 3)
                                           tttattattca  TA-rich tract